Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RJD40_RS01230 Genome accession   NZ_CP134280
Coordinates   276048..276680 (-) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 271048..281680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS01210 (RJD40_01215) - 271143..272357 (+) 1215 WP_065429741.1 aspartate aminotransferase family protein -
  RJD40_RS01215 (RJD40_01220) astA 272418..273437 (+) 1020 WP_005597162.1 arginine N-succinyltransferase -
  RJD40_RS01220 (RJD40_01225) astD 273463..274920 (+) 1458 WP_418113799.1 succinylglutamate-semialdehyde dehydrogenase -
  RJD40_RS01225 (RJD40_01230) - 275031..275822 (+) 792 WP_418113800.1 DUF1338 domain-containing protein -
  RJD40_RS01230 (RJD40_01235) crp 276048..276680 (-) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  RJD40_RS01235 (RJD40_01240) - 276924..277793 (-) 870 WP_005597158.1 phosphoribulokinase -
  RJD40_RS01240 (RJD40_01245) - 277988..278200 (-) 213 WP_005597157.1 YheU family protein -
  RJD40_RS01245 (RJD40_01250) - 278243..279217 (-) 975 WP_065429744.1 hydrolase -
  RJD40_RS01250 (RJD40_01255) - 279223..279714 (-) 492 WP_005597155.1 TIGR02444 family protein -
  RJD40_RS01255 (RJD40_01260) - 279714..281633 (-) 1920 WP_009386387.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=879627 RJD40_RS01230 WP_005597159.1 276048..276680(-) (crp) [Vibrio scophthalmi strain 21FBVib0106]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=879627 RJD40_RS01230 WP_005597159.1 276048..276680(-) (crp) [Vibrio scophthalmi strain 21FBVib0106]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATCCACGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCCGTACTTATTAAAG
ATGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGCTTGGTCTATTTGAAGAAGAT
CAAGAGCGTACCGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCGGAAATCTCGTTCAAAAAATTCCGTCAGTTGAT
TCAGGTAAACCCTGATATTCTAATGCGTCTTTCTTCACAGATGGCTCGTCGTCTACAAGTGACTAGCCAAAAAGTAGGCG
ACCTAGCCTTCCTAGACGTAACTGGCCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCTCGTGAAACCGTTGGTCGTAT
CTTGAAGATGCTGGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACTATCGTTGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467