Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RJD39_RS12725 Genome accession   NZ_CP134277
Coordinates   2732640..2734163 (+) Length   507 a.a.
NCBI ID   WP_406732329.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2727640..2739163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS12710 (RJD39_12685) - 2729248..2730192 (-) 945 WP_065429601.1 branched-chain amino acid transaminase -
  RJD39_RS12715 (RJD39_12690) ilvM 2730206..2730490 (-) 285 WP_005597332.1 acetolactate synthase 2 small subunit -
  RJD39_RS12720 (RJD39_12695) ilvG 2730492..2732138 (-) 1647 WP_406732328.1 acetolactate synthase 2 catalytic subunit -
  RJD39_RS12725 (RJD39_12700) comM 2732640..2734163 (+) 1524 WP_406732329.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RJD39_RS12730 (RJD39_12705) - 2734239..2735219 (-) 981 WP_406732331.1 DUF2860 domain-containing protein -
  RJD39_RS12735 (RJD39_12710) - 2735772..2736374 (-) 603 WP_005597338.1 thiol:disulfide interchange protein DsbA/DsbL -
  RJD39_RS12740 (RJD39_12715) - 2736405..2737391 (-) 987 WP_009386317.1 serine/threonine protein kinase -
  RJD39_RS12745 (RJD39_12720) - 2737503..2738501 (-) 999 WP_406732333.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54978.94 Da        Isoelectric Point: 8.3864

>NTDB_id=879607 RJD39_RS12725 WP_406732329.1 2732640..2734163(+) (comM) [Vibrio scophthalmi strain 21FBVib0096]
MGLAVVYSRASVGVEAPLVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIPLNPLTQSEFIGELALSGELRAVKGVLPAALIAQQQGRRLVVPHCNGDQAALVGKEKHKSAQSL
LEVCADLCGQQALALHQTDTQPHIATHARDLRDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEALESASVASLTQQEINQFNWKCRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDALREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPSGHYDAKQSHGNSQAALRYLSRLSGPLLDRFDMSLEIPALPQGTLAEGGER
GEATEVVKARVEKARKEMLARSGKANALLGSREIEQYCHLDRSDAQFLEQALHRLGLSVRAYHRIIKVARTIADLSGEAQ
ISRAHLSEALGYRAMDRLMRHLHAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=879607 RJD39_RS12725 WP_406732329.1 2732640..2734163(+) (comM) [Vibrio scophthalmi strain 21FBVib0096]
ATGGGTTTAGCTGTGGTATACAGCCGCGCATCGGTAGGCGTGGAGGCACCGTTGGTGACGGTTGAGGTGCACATTAGTAA
TGGCATGCCGGGTTTTGCGCTGGTGGGTTTGCCAGAGACAACGGTGAAGGAGTCTCGTGATCGCGTGCGCAGCGCGATCA
TTAACTCGCGTTTTGAGTTTCCGGCCAAGCGGATTACGGTCAATTTAGCGCCCGCTGATTTACCTAAAGAAGGTGGCCGT
TTTGATTTGCCAATTGCGTTAGGTATTTTAGCGGCTTCACAGCAAATTCCACTCAATCCACTCACTCAAAGTGAGTTTAT
TGGTGAACTGGCATTATCTGGGGAATTGCGAGCGGTGAAAGGCGTGTTGCCCGCGGCACTGATCGCGCAGCAACAAGGAC
GCCGTTTGGTGGTGCCGCATTGCAATGGTGACCAAGCCGCATTGGTGGGTAAAGAAAAACATAAATCTGCACAAAGCTTG
CTTGAGGTGTGCGCCGACCTATGCGGTCAACAAGCATTAGCCTTGCACCAAACCGATACGCAGCCACATATCGCCACTCA
TGCGCGAGATCTGCGTGACATCATTGGTCAGCAGCAGGGTAAGCGTGCGCTGGAAATCGCTGCCGCGGGTCATCATAACT
TGTTGTTTCTTGGCCCTCCGGGCACCGGTAAAACCATGCTCGCTTCACGCCTGCGCGATTTGCTGCCGGAAATGTCGGAT
GATGAAGCGTTAGAGTCGGCCTCGGTGGCTTCGCTGACCCAGCAGGAAATCAATCAATTTAACTGGAAATGTCGGCCATT
TCGCTCGCCGCACCACTCCAGTTCGATGGCTGCACTGGTCGGTGGTGGCTCGGTTCCTAGGCCGGGGGAGATTTCTTTGG
CGCATAATGGGCTGTTATTTCTCGATGAGATGCCTGAGTTTGAACGTAAAGTGCTGGATGCGTTACGTGAGCCGCTGGAA
TCTGGCGAGATTATTATTTCCCGTGCGCAGGGCAAAACCCGTTTTCCTGCGCGCTTTCAGTTAGTCGGAGCGCTTAATCC
TAGCCCAAGTGGTCACTATGATGCCAAGCAAAGTCACGGTAATTCCCAAGCGGCACTGCGTTATTTGAGTCGTTTGTCAG
GGCCGTTGTTGGATCGTTTTGATATGTCGTTAGAAATCCCAGCCTTGCCACAAGGGACATTGGCCGAAGGGGGTGAGCGA
GGAGAAGCGACTGAGGTGGTGAAAGCCCGCGTGGAAAAAGCTCGGAAGGAGATGCTTGCTCGGAGTGGTAAAGCCAATGC
TCTATTGGGCAGTCGAGAGATCGAGCAATACTGCCACCTTGATAGAAGTGACGCGCAATTTTTAGAGCAAGCGTTGCATC
GTTTAGGCTTATCGGTTCGCGCCTATCATCGCATCATTAAAGTGGCGCGTACCATTGCTGACTTGTCTGGTGAAGCGCAG
ATTTCACGAGCGCACTTATCCGAAGCGTTAGGTTATCGCGCAATGGATCGATTAATGCGTCATTTACACGCACAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

81.46

100

0.815
  comM Vibrio campbellii strain DS40M4

80.473

100

0.805
  comM Haemophilus influenzae Rd KW20

64.229

99.803

0.641
  comM Glaesserella parasuis strain SC1401

63.405

100

0.639
  comM Legionella pneumophila str. Paris

49.405

99.408

0.491
  comM Legionella pneumophila strain ERS1305867

49.405

99.408

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.444