Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RJD39_RS13180 Genome accession   NZ_CP134277
Coordinates   2814754..2815398 (+) Length   214 a.a.
NCBI ID   WP_406734089.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2809754..2820398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS13160 (RJD39_13135) greB 2810064..2810552 (+) 489 WP_406732396.1 transcription elongation factor GreB -
  RJD39_RS13165 (RJD39_13140) - 2810712..2813042 (+) 2331 WP_406732397.1 Tex family protein -
  RJD39_RS13170 (RJD39_13145) - 2813174..2813644 (-) 471 WP_005596930.1 hypothetical protein -
  RJD39_RS13175 (RJD39_13150) bioH 2813736..2814578 (-) 843 WP_406732399.1 pimeloyl-ACP methyl ester esterase BioH -
  RJD39_RS13180 (RJD39_13155) comF 2814754..2815398 (+) 645 WP_406734089.1 ComF family protein Machinery gene
  RJD39_RS13185 (RJD39_13160) nfuA 2815506..2816093 (+) 588 WP_005596938.1 Fe-S biogenesis protein NfuA -
  RJD39_RS13190 (RJD39_13165) nudE 2816338..2816886 (+) 549 WP_005596939.1 ADP compounds hydrolase NudE -
  RJD39_RS13195 (RJD39_13170) cysQ 2816912..2817739 (+) 828 WP_406732401.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24165.13 Da        Isoelectric Point: 8.4957

>NTDB_id=879609 RJD39_RS13180 WP_406734089.1 2814754..2815398(+) (comF) [Vibrio scophthalmi strain 21FBVib0096]
MLPLEGRDQPGPGSWLLCQACLEGLSIPSRCQCCGMTTLHPVAQCGHCLSQPPPWRQLYCVGDYTPPLSDYVQQLKFARQ
LHYVEVLADLLALQVQPNIQMITYVPLHWHRQLWRGFNQSEFLARALAQRLGLPCLALFKRTRATRSQRGMDRQQRQRNL
RGAFTLTKSVTELQSVAIVDDVVTTGSTVQQLCKLLLDAGVKSVDIYCICRTPE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=879609 RJD39_RS13180 WP_406734089.1 2814754..2815398(+) (comF) [Vibrio scophthalmi strain 21FBVib0096]
TTGCTGCCGCTAGAGGGGCGTGACCAGCCAGGCCCTGGGTCATGGTTATTGTGCCAAGCGTGCTTGGAAGGACTAAGCAT
ACCGTCTCGTTGCCAGTGTTGTGGTATGACAACGCTTCATCCGGTTGCTCAATGTGGTCATTGTTTGTCGCAACCGCCAC
CTTGGCGGCAACTCTATTGTGTTGGTGACTACACGCCGCCATTGTCCGATTATGTTCAGCAATTAAAGTTTGCTCGTCAG
CTGCATTATGTTGAGGTATTGGCCGATCTGCTTGCTCTACAAGTCCAACCAAATATTCAGATGATCACTTATGTACCCTT
ACACTGGCATCGGCAATTGTGGCGTGGATTTAATCAAAGTGAATTTCTAGCGCGAGCGTTGGCACAGCGACTCGGTCTTC
CTTGCCTAGCACTGTTTAAGCGTACTCGTGCTACTCGTTCACAACGGGGTATGGATCGCCAGCAACGACAACGTAATTTA
CGTGGCGCATTTACGCTGACGAAAAGCGTGACTGAACTTCAATCCGTCGCGATTGTTGATGATGTAGTGACGACAGGGAG
TACTGTGCAGCAATTATGCAAATTACTACTTGATGCTGGAGTTAAAAGTGTTGATATTTACTGTATCTGCCGTACTCCTG
AATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(123-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.779

92.991

0.519
  comF Vibrio campbellii strain DS40M4

47.926

100

0.486