Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | RJD38_RS08520 | Genome accession | NZ_CP134271 |
| Coordinates | 1844348..1844995 (-) | Length | 215 a.a. |
| NCBI ID | WP_005593085.1 | Uniprot ID | A0A1B1NL12 |
| Organism | Vibrio scophthalmi strain 20FBVib0200 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1823746..1894715 | 1844348..1844995 | within | 0 |
Gene organization within MGE regions
Location: 1823746..1894715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJD38_RS08425 (RJD38_08425) | mltC | 1823746..1824882 (-) | 1137 | WP_005595619.1 | membrane-bound lytic murein transglycosylase MltC | - |
| RJD38_RS08430 (RJD38_08430) | - | 1824957..1825229 (-) | 273 | WP_005595621.1 | oxidative damage protection protein | - |
| RJD38_RS08435 (RJD38_08435) | mutY | 1825246..1826298 (-) | 1053 | WP_065545747.1 | A/G-specific adenine glycosylase | - |
| RJD38_RS08440 (RJD38_08440) | trmB | 1826471..1827190 (+) | 720 | WP_005595625.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| RJD38_RS08445 (RJD38_08445) | glsB | 1827328..1828248 (+) | 921 | WP_005595627.1 | glutaminase B | - |
| RJD38_RS08450 (RJD38_08450) | hemW | 1828419..1829594 (-) | 1176 | WP_065545746.1 | radical SAM family heme chaperone HemW | - |
| RJD38_RS08455 (RJD38_08455) | - | 1829598..1830194 (-) | 597 | WP_065545745.1 | XTP/dITP diphosphatase | - |
| RJD38_RS08460 (RJD38_08460) | - | 1830207..1830638 (-) | 432 | WP_065545744.1 | DUF4426 domain-containing protein | - |
| RJD38_RS08465 (RJD38_08465) | yggU | 1830669..1830959 (-) | 291 | WP_065545743.1 | DUF167 family protein YggU | - |
| RJD38_RS08470 (RJD38_08470) | - | 1830959..1831516 (-) | 558 | WP_065429768.1 | YggT family protein | - |
| RJD38_RS08475 (RJD38_08475) | proC | 1831558..1832376 (-) | 819 | WP_065545742.1 | pyrroline-5-carboxylate reductase | - |
| RJD38_RS08480 (RJD38_08480) | - | 1832427..1833143 (-) | 717 | WP_009385811.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RJD38_RS08485 (RJD38_08485) | pilT | 1833168..1834199 (+) | 1032 | WP_005595639.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RJD38_RS08490 (RJD38_08490) | pilU | 1834214..1835314 (+) | 1101 | WP_065545741.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| RJD38_RS08495 (RJD38_08495) | lysC | 1835381..1836733 (-) | 1353 | WP_065545740.1 | lysine-sensitive aspartokinase 3 | - |
| RJD38_RS08500 (RJD38_08500) | - | 1837198..1838319 (+) | 1122 | WP_065545739.1 | pyridoxal-phosphate-dependent aminotransferase family protein | - |
| RJD38_RS08505 (RJD38_08505) | - | 1838399..1840168 (-) | 1770 | WP_065545738.1 | PglL family O-oligosaccharyltransferase | - |
| RJD38_RS08510 (RJD38_08510) | uvrA | 1840351..1843173 (-) | 2823 | WP_065545737.1 | excinuclease ABC subunit UvrA | - |
| RJD38_RS08515 (RJD38_08515) | galU | 1843357..1844229 (-) | 873 | WP_065429774.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| RJD38_RS08520 (RJD38_08520) | qstR | 1844348..1844995 (-) | 648 | WP_005593085.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| RJD38_RS08525 (RJD38_08525) | ssb | 1845294..1845833 (+) | 540 | WP_065545736.1 | single-stranded DNA-binding protein | Machinery gene |
| RJD38_RS08530 (RJD38_08530) | - | 1845982..1847328 (+) | 1347 | WP_367971209.1 | tyrosine-type recombinase/integrase | - |
| RJD38_RS08535 (RJD38_08535) | - | 1847318..1848925 (+) | 1608 | WP_367971210.1 | site-specific integrase | - |
| RJD38_RS08540 (RJD38_08540) | - | 1848918..1851143 (+) | 2226 | WP_367971211.1 | hypothetical protein | - |
| RJD38_RS08545 (RJD38_08545) | - | 1851143..1851637 (+) | 495 | WP_367971212.1 | hypothetical protein | - |
| RJD38_RS08550 (RJD38_08550) | - | 1851841..1852707 (-) | 867 | WP_367971214.1 | hypothetical protein | - |
| RJD38_RS08555 (RJD38_08555) | istA | 1852861..1853880 (+) | 1020 | WP_065432195.1 | IS21 family transposase | - |
| RJD38_RS08560 (RJD38_08560) | istB | 1853877..1854668 (+) | 792 | WP_065432194.1 | IS21-like element helper ATPase IstB | - |
| RJD38_RS08565 (RJD38_08565) | - | 1854688..1856055 (-) | 1368 | WP_367971215.1 | hypothetical protein | - |
| RJD38_RS08570 (RJD38_08570) | - | 1856429..1857010 (+) | 582 | WP_367971216.1 | recombinase family protein | - |
| RJD38_RS08575 (RJD38_08575) | - | 1857074..1857514 (+) | 441 | WP_367971218.1 | hypothetical protein | - |
| RJD38_RS08580 (RJD38_08580) | - | 1857511..1859697 (+) | 2187 | WP_367971219.1 | AAA family ATPase | - |
| RJD38_RS08585 (RJD38_08585) | csrD | 1860016..1862022 (+) | 2007 | WP_065545735.1 | RNase E specificity factor CsrD | - |
| RJD38_RS08590 (RJD38_08590) | - | 1862030..1863472 (+) | 1443 | WP_065545734.1 | MSHA biogenesis protein MshI | - |
| RJD38_RS08595 (RJD38_08595) | - | 1863469..1864119 (+) | 651 | WP_005593090.1 | type 4a pilus biogenesis protein PilO | - |
| RJD38_RS08600 (RJD38_08600) | - | 1864127..1864450 (+) | 324 | WP_040757806.1 | hypothetical protein | - |
| RJD38_RS08605 (RJD38_08605) | mshL | 1864466..1866106 (+) | 1641 | WP_065545733.1 | pilus (MSHA type) biogenesis protein MshL | - |
| RJD38_RS08610 (RJD38_08610) | - | 1866113..1866952 (+) | 840 | WP_065429779.1 | ExeA family protein | - |
| RJD38_RS08615 (RJD38_08615) | - | 1866956..1868200 (+) | 1245 | WP_065545732.1 | tetratricopeptide repeat protein | - |
| RJD38_RS08620 (RJD38_08620) | - | 1868190..1869914 (+) | 1725 | WP_065545731.1 | GspE/PulE family protein | - |
| RJD38_RS08625 (RJD38_08625) | - | 1869923..1871143 (+) | 1221 | WP_065545730.1 | type II secretion system F family protein | - |
| RJD38_RS08630 (RJD38_08630) | - | 1871127..1871606 (+) | 480 | WP_065545729.1 | MSHA biogenesis protein MshF | - |
| RJD38_RS08635 (RJD38_08635) | - | 1871687..1872262 (+) | 576 | WP_065545999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RJD38_RS08640 (RJD38_08640) | - | 1872299..1872778 (+) | 480 | WP_065545728.1 | type II secretion system protein | - |
| RJD38_RS08645 (RJD38_08645) | - | 1872900..1873367 (+) | 468 | WP_065545727.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RJD38_RS08650 (RJD38_08650) | - | 1873367..1873933 (+) | 567 | WP_065545726.1 | type IV pilus modification PilV family protein | - |
| RJD38_RS08655 (RJD38_08655) | - | 1873933..1874685 (+) | 753 | WP_065545725.1 | PilW family protein | - |
| RJD38_RS08665 (RJD38_08665) | - | 1874801..1875186 (+) | 386 | Protein_1630 | MSHA biogenesis protein MshP | - |
| RJD38_RS08670 (RJD38_08670) | - | 1875186..1876574 (+) | 1389 | WP_065545724.1 | hypothetical protein | - |
| RJD38_RS08675 (RJD38_08675) | - | 1876566..1877597 (-) | 1032 | WP_175422461.1 | IS630 family transposase | - |
| RJD38_RS08680 (RJD38_08680) | - | 1877695..1879722 (+) | 2028 | WP_065545723.1 | DUF6701 domain-containing protein | - |
| RJD38_RS08685 (RJD38_08685) | - | 1879875..1880918 (+) | 1044 | WP_005593107.1 | rod shape-determining protein | - |
| RJD38_RS08690 (RJD38_08690) | mreC | 1880978..1881865 (+) | 888 | WP_065429790.1 | rod shape-determining protein MreC | - |
| RJD38_RS08695 (RJD38_08695) | mreD | 1881855..1882343 (+) | 489 | WP_005593111.1 | rod shape-determining protein MreD | - |
| RJD38_RS08700 (RJD38_08700) | - | 1882346..1882906 (+) | 561 | WP_065545722.1 | Maf family protein | - |
| RJD38_RS08705 (RJD38_08705) | rng | 1882926..1884395 (+) | 1470 | WP_005593115.1 | ribonuclease G | - |
| RJD38_RS08710 (RJD38_08710) | - | 1884406..1888278 (+) | 3873 | WP_367971222.1 | YhdP family protein | - |
| RJD38_RS08715 (RJD38_08715) | - | 1888308..1889126 (+) | 819 | WP_065545720.1 | carbon-nitrogen hydrolase family protein | - |
| RJD38_RS08720 (RJD38_08720) | tldD | 1889136..1890581 (+) | 1446 | WP_009385839.1 | metalloprotease TldD | - |
| RJD38_RS08725 (RJD38_08725) | arcA | 1890754..1891974 (-) | 1221 | WP_005593119.1 | arginine deiminase | - |
| RJD38_RS08730 (RJD38_08730) | rraB | 1892515..1892937 (+) | 423 | WP_065429795.1 | ribonuclease E inhibitor RraB | - |
| RJD38_RS08735 (RJD38_08735) | - | 1893078..1894715 (+) | 1638 | WP_014386729.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25017.80 Da Isoelectric Point: 9.2851
>NTDB_id=879568 RJD38_RS08520 WP_005593085.1 1844348..1844995(-) (qstR) [Vibrio scophthalmi strain 20FBVib0200]
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
Nucleotide
Download Length: 648 bp
>NTDB_id=879568 RJD38_RS08520 WP_005593085.1 1844348..1844995(-) (qstR) [Vibrio scophthalmi strain 20FBVib0200]
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGTATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGCTGATCGACCATAACAACTACCAGACGTTAAATAGCACCATTCGCAACTTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAACTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGATCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGCTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCGGTAAAGAACCGCGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGTATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGCTGATCGACCATAACAACTACCAGACGTTAAATAGCACCATTCGCAACTTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAACTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGATCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGCTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCGGTAAAGAACCGCGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
56.542 |
99.535 |
0.563 |
| qstR | Vibrio campbellii strain DS40M4 |
54.419 |
100 |
0.544 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
53.488 |
100 |
0.535 |