Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RJ610_RS19690 Genome accession   NZ_CP134270
Coordinates   4773334..4774743 (+) Length   469 a.a.
NCBI ID   WP_036104561.1    Uniprot ID   A0A108UCN7
Organism   Lysobacter capsici strain XL1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4768334..4779743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ610_RS19670 (RJ610_19670) - 4768597..4768953 (-) 357 WP_310978534.1 endonuclease domain-containing protein -
  RJ610_RS19675 (RJ610_19675) sucD 4769248..4770123 (-) 876 WP_036104545.1 succinate--CoA ligase subunit alpha -
  RJ610_RS19680 (RJ610_19680) sucC 4770136..4771302 (-) 1167 WP_036104548.1 ADP-forming succinate--CoA ligase subunit beta -
  RJ610_RS19685 (RJ610_19685) - 4771623..4773248 (+) 1626 WP_310978535.1 ATP-binding protein -
  RJ610_RS19690 (RJ610_19690) pilR 4773334..4774743 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  RJ610_RS19695 (RJ610_19695) pilA2 4775295..4775714 (+) 420 WP_310978536.1 pilin Machinery gene
  RJ610_RS19700 (RJ610_19700) pilA2 4775936..4776346 (+) 411 WP_310978537.1 pilin Machinery gene
  RJ610_RS19705 (RJ610_19705) - 4776465..4778360 (+) 1896 WP_310978538.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50831.29 Da        Isoelectric Point: 6.8485

>NTDB_id=879537 RJ610_RS19690 WP_036104561.1 4773334..4774743(+) (pilR) [Lysobacter capsici strain XL1]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLIAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KILHRLAGNQGRPVPRLGEDALEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLSTQPPPLPAHAVQAGNP
SPQPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=879537 RJ610_RS19690 WP_036104561.1 4773334..4774743(+) (pilR) [Lysobacter capsici strain XL1]
ATGGCTGAAACACGTAGTGCATTGGTAGTCGACGACGAGCGCGATATTCGCGAGCTGCTCGTCATGACCTTGGGCCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAGCCAGAAGTATCCGAACACTCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGT
CGACCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAAGCGGTGG
GCTCGCGCCTGTACGGCGAGTCGCCGGCGATGATCAAGTTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCCCCG
GTGTACATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATTCATTCCGAAGGCGGCCGCGCAGACGG
TCCGTTCGTACCGGTCAACTGCGGTGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAA
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATCCTCTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGTCAGGACC
TTTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGTTGCGCGAACGGCTCGACGACCTGCCCGGCCTGGCCTCG
AAGATCCTGCACCGGCTCGCCGGCAACCAGGGCCGGCCGGTGCCGCGACTGGGCGAGGACGCGCTCGAAGCGCTGCGCGC
CTACGGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGTCGACCCAGCCGCCGCCGCTGCCGGCCCACGCGGTCCAGGCCGGCAACCCG
TCGCCGCAGCCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGGCCCTAGGCA
TCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108UCN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.741

99.574

0.625
  pilR Acinetobacter baumannii strain A118

48.117

100

0.49