Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   RJ610_RS19695 Genome accession   NZ_CP134270
Coordinates   4775295..4775714 (+) Length   139 a.a.
NCBI ID   WP_310978536.1    Uniprot ID   -
Organism   Lysobacter capsici strain XL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4770295..4780714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ610_RS19685 (RJ610_19685) - 4771623..4773248 (+) 1626 WP_310978535.1 ATP-binding protein -
  RJ610_RS19690 (RJ610_19690) pilR 4773334..4774743 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  RJ610_RS19695 (RJ610_19695) pilA2 4775295..4775714 (+) 420 WP_310978536.1 pilin Machinery gene
  RJ610_RS19700 (RJ610_19700) pilA2 4775936..4776346 (+) 411 WP_310978537.1 pilin Machinery gene
  RJ610_RS19705 (RJ610_19705) - 4776465..4778360 (+) 1896 WP_310978538.1 hypothetical protein -
  RJ610_RS19710 (RJ610_19710) - 4778409..4780316 (+) 1908 WP_310978539.1 hypothetical protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14530.57 Da        Isoelectric Point: 4.5408

>NTDB_id=879538 RJ610_RS19695 WP_310978536.1 4775295..4775714(+) (pilA2) [Lysobacter capsici strain XL1]
MKKQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNAECINVAAGAKLAVAETAQDRGTLTAVNNDADAGYSFDESS
YCQDVVIGANGVITATTQDTGAATPSVFTLTPTSAAGRLEWMCRGTGKASQIPAECRAP

Nucleotide


Download         Length: 420 bp        

>NTDB_id=879538 RJ610_RS19695 WP_310978536.1 4775295..4775714(+) (pilA2) [Lysobacter capsici strain XL1]
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTCGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGGACTACACGATCCGCACCAAGAACGCTGAGTGCATCAACGTTGCTGCCGGCGCCAAGCTCGCCGTCG
CGGAAACCGCTCAGGATCGCGGCACCCTGACCGCCGTCAACAACGATGCCGACGCTGGCTACAGCTTCGACGAATCGTCG
TACTGCCAGGACGTCGTGATCGGCGCCAACGGCGTGATCACCGCGACCACCCAGGACACCGGTGCGGCCACCCCGTCCGT
GTTCACCCTGACCCCGACCTCGGCTGCTGGCCGCCTGGAATGGATGTGCCGTGGCACCGGCAAGGCTTCGCAGATTCCGG
CCGAATGCCGCGCCCCGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

51.449

99.281

0.511
  pilA2 Legionella pneumophila str. Paris

50.725

99.281

0.504
  comP Acinetobacter baylyi ADP1

41.497

100

0.439
  pilA Ralstonia pseudosolanacearum GMI1000

35.758

100

0.424
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.176

97.842

0.403
  pilE Neisseria gonorrhoeae strain FA1090

44.355

89.209

0.396
  pilA/pilA1 Eikenella corrodens VA1

40.152

94.964

0.381
  pilE Neisseria gonorrhoeae MS11

41.732

91.367

0.381