Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QU597_RS28635 Genome accession   NZ_CP134223
Coordinates   6456129..6456629 (-) Length   166 a.a.
NCBI ID   WP_054942635.1    Uniprot ID   -
Organism   Paenibacillus pedocola strain TW48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6451129..6461629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU597_RS28620 - 6452904..6454862 (-) 1959 WP_310830849.1 DNA mismatch repair protein MutS -
  QU597_RS28625 - 6455300..6455674 (-) 375 WP_310830850.1 VOC family protein -
  QU597_RS28630 rpsR 6455835..6456107 (-) 273 WP_019914552.1 30S ribosomal protein S18 -
  QU597_RS28635 ssbA 6456129..6456629 (-) 501 WP_054942635.1 single-stranded DNA-binding protein Machinery gene
  QU597_RS28640 rpsF 6456677..6456961 (-) 285 WP_054942636.1 30S ribosomal protein S6 -
  QU597_RS28645 - 6457178..6457375 (+) 198 WP_054942637.1 YjzC family protein -
  QU597_RS28655 - 6457880..6458092 (-) 213 WP_310830851.1 DUF951 domain-containing protein -
  QU597_RS28660 - 6458092..6459081 (-) 990 WP_310830852.1 mechanosensitive ion channel family protein -
  QU597_RS28665 - 6459096..6459350 (-) 255 WP_310830853.1 DUF3343 domain-containing protein -
  QU597_RS28670 yyaC 6459545..6460153 (+) 609 WP_310830854.1 spore protease YyaC -
  QU597_RS28675 - 6460125..6460625 (-) 501 WP_206102605.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18293.06 Da        Isoelectric Point: 4.8280

>NTDB_id=879477 QU597_RS28635 WP_054942635.1 6456129..6456629(-) (ssbA) [Paenibacillus pedocola strain TW48]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGNVPEEPSYGGGGNSGRGNNNNFSRSNNNQDPFSGDGKPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=879477 QU597_RS28635 WP_054942635.1 6456129..6456629(-) (ssbA) [Paenibacillus pedocola strain TW48]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTCATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGGCGTCTGGCAGCCGTAGAAGGCCGCATCCAAGTACGG
AATTACGAGAATAACGAAGGTAAACGCGTATACGTTACTGAAGTTATTGCCGATAATGTCCGTTTCCTGGAATCCTCGCA
GAATCGTGAAGGTGGCAATGCGCCAAGTGGCGGAAATGTACCCGAAGAACCATCCTATGGTGGCGGCGGTAACAGCGGAC
GCGGAAATAACAACAATTTCTCGCGCAGCAACAATAATCAAGATCCTTTTTCAGGCGATGGAAAACCGATCGATATATCG
GACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.682

100

0.59
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.518
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367