Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RIN70_RS10275 Genome accession   NZ_CP134147
Coordinates   2117555..2118316 (+) Length   253 a.a.
NCBI ID   WP_070594308.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112555..2123316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS10250 (RIN70_10250) comE/comE2 2113064..2113822 (-) 759 WP_003009229.1 response regulator transcription factor Regulator
  RIN70_RS10255 (RIN70_10255) - 2113819..2115159 (-) 1341 WP_049473259.1 GHKL domain-containing protein -
  RIN70_RS10265 (RIN70_10265) rlmH 2115618..2116097 (-) 480 WP_272144733.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RIN70_RS10270 (RIN70_10270) htrA 2116302..2117483 (+) 1182 WP_272144731.1 S1C family serine protease Regulator
  RIN70_RS10275 (RIN70_10275) spo0J 2117555..2118316 (+) 762 WP_070594308.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29401.93 Da        Isoelectric Point: 9.7134

>NTDB_id=878892 RIN70_RS10275 WP_070594308.1 2117555..2118316(+) (spo0J) [Streptococcus parasanguinis strain 30.8.10]
MEKLEKIAVKDIRTNPFQPRKVFDQEKLEELAQSIKENGLIQPIIVRKSPIIGFELLAGERRFRASKIAGLELVPAIIKE
LTDQEMMRQAIIENLQREDLNPIEEAISYQKLVDHGYKHDQIAQFMGKSRPYISNMLRLLHLAPSVQEAVIQNDISSAHA
RVLVPLDEEEQRFWLERIKQDHLNVRTLENKISSKRKQKNKKTKENFLLEEEQRLKKILGTDVTIHSSSQNKGTIQISFS
SLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=878892 RIN70_RS10275 WP_070594308.1 2117555..2118316(+) (spo0J) [Streptococcus parasanguinis strain 30.8.10]
ATGGAAAAATTAGAAAAAATAGCGGTAAAGGACATTCGAACCAATCCTTTCCAACCAAGAAAAGTATTTGATCAAGAAAA
ATTAGAAGAACTGGCTCAGTCAATCAAAGAAAATGGCTTAATTCAACCCATTATTGTCAGAAAATCTCCAATAATTGGTT
TTGAATTGCTTGCAGGTGAAAGACGTTTTAGAGCTTCAAAAATTGCTGGATTAGAGCTTGTTCCTGCGATTATTAAAGAG
TTAACGGATCAAGAAATGATGCGACAAGCCATTATTGAAAATCTTCAACGAGAAGATCTCAATCCAATTGAAGAAGCTAT
CTCCTACCAAAAGCTCGTTGATCATGGCTATAAGCACGACCAAATCGCTCAATTTATGGGGAAATCTAGACCCTATATCA
GCAATATGCTTCGCTTGTTACATCTAGCTCCCTCTGTTCAAGAAGCAGTCATTCAAAATGATATTTCTTCGGCTCACGCG
CGTGTTCTTGTTCCTCTTGATGAGGAAGAGCAGCGCTTTTGGTTGGAGCGAATCAAACAGGATCATTTAAATGTTCGAAC
ATTAGAAAATAAGATCAGTTCAAAAAGAAAACAGAAAAATAAAAAAACAAAAGAAAATTTCCTACTAGAAGAGGAACAAC
GATTGAAAAAAATATTAGGAACAGATGTGACGATACACTCCTCTTCTCAAAATAAAGGAACTATCCAAATTTCTTTTTCC
AGTCTTGATGAATACCAACGAATTATCAACAGCCTTAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.012

100

0.49