Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RIN70_RS07315 Genome accession   NZ_CP134147
Coordinates   1447964..1448968 (-) Length   334 a.a.
NCBI ID   WP_049490938.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442964..1453968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS07300 (RIN70_07300) thrS 1443203..1445146 (-) 1944 WP_195623467.1 threonine--tRNA ligase -
  RIN70_RS07305 (RIN70_07305) - 1445500..1446822 (-) 1323 WP_049485662.1 glycosyltransferase family 4 protein -
  RIN70_RS07310 (RIN70_07310) - 1446824..1447822 (-) 999 WP_003008161.1 glycosyltransferase family 4 protein -
  RIN70_RS07315 (RIN70_07315) ccpA 1447964..1448968 (-) 1005 WP_049490938.1 catabolite control protein A Regulator
  RIN70_RS07320 (RIN70_07320) - 1449129..1450211 (+) 1083 WP_003005548.1 Xaa-Pro peptidase family protein -
  RIN70_RS07325 (RIN70_07325) - 1450452..1450901 (-) 450 WP_031576605.1 Rrf2 family transcriptional regulator -
  RIN70_RS07330 (RIN70_07330) - 1451014..1451856 (-) 843 WP_129824040.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37151.26 Da        Isoelectric Point: 6.9973

>NTDB_id=878880 RIN70_RS07315 WP_049490938.1 1447964..1448968(-) (ccpA) [Streptococcus parasanguinis strain 30.8.10]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNNLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATVDAVTQLAKHNKRIAFVSGPLVDDINGKIRLTGYKEALKVKKLSYSEGLVFESKYRYDEGYNLAERIIASK
ATAAFVTGDELAAGLLNGLSDKGIKVPEDFEIITSDDSQVTRYTRPNLSTIGQPLYDLGAISMRMLTKIMHKEELEEREV
LLSHTINQRGTTKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=878880 RIN70_RS07315 WP_049490938.1 1447964..1448968(-) (ccpA) [Streptococcus parasanguinis strain 30.8.10]
ATGAATACAGACGATACAGTAACAATTTATGATGTCGCCCGTGAAGCAGGGGTTTCAATGGCAACCGTTAGTCGTGTAGT
AAATGGGAATAAAAACGTTAAAGAAAATACACGTAAAAAAGTTTTAGAAGTGATCGAACGCTTGGATTACCGTCCAAATG
CTGTTGCGCGTGGTCTTGCTAGCAAGAAAACAACAACAGTCGGTGTTGTGATTCCAAACATCACGAATAGCTATTTCTCT
ACATTGGCTAAGGGGATCGATGACATTGCTGAAATGTACAAGTACAATATTGTTCTTGCAAATAGTGATGAAGACGATGA
CAAAGAAGTTTCAGTGGTAAACAACCTCTTTTCAAAACAAGTGGATGGGATCATTTTCATGGGTTATCACTTGACTGAAA
AGATTCGCTCAGAATTTTCACGCTCTCGGACGCCAGTTGTCCTTGCTGGGACAGTGGATGTTGAACACCAATTACCAAGT
GTCAATATCGACTACAAGCAAGCAACCGTTGATGCTGTTACACAGTTGGCAAAACACAACAAGAGAATTGCTTTTGTAAG
TGGCCCATTGGTGGATGATATCAATGGAAAAATTCGTTTGACAGGCTACAAAGAAGCTTTGAAAGTGAAAAAATTGAGTT
ATAGCGAAGGACTTGTGTTTGAATCCAAGTACCGGTACGATGAAGGTTATAACTTGGCAGAACGCATCATTGCATCCAAA
GCAACAGCTGCCTTTGTAACAGGGGATGAATTGGCTGCAGGTCTCTTGAACGGCTTGTCTGATAAGGGGATCAAGGTACC
AGAAGACTTTGAAATTATCACCAGTGATGATTCACAAGTAACTCGTTATACGCGTCCAAATCTATCAACGATTGGCCAAC
CTTTGTATGACCTTGGTGCGATCAGTATGCGCATGTTGACCAAGATCATGCACAAAGAAGAGTTGGAAGAACGCGAAGTA
CTGTTGTCTCATACGATCAACCAACGTGGAACGACCAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

90.719

100

0.907
  ccpA Streptococcus pneumoniae D39

85.629

100

0.856
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.495

99.102

0.56