Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RIN70_RS06435 Genome accession   NZ_CP134147
Coordinates   1253007..1254992 (-) Length   661 a.a.
NCBI ID   WP_313790457.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248007..1259992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS06425 (RIN70_06425) trxA 1249446..1249760 (-) 315 WP_049483759.1 thioredoxin -
  RIN70_RS06430 (RIN70_06430) - 1249858..1252887 (-) 3030 WP_313790456.1 CocE/NonD family hydrolase -
  RIN70_RS06435 (RIN70_06435) amiA 1253007..1254992 (-) 1986 WP_313790457.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS06440 (RIN70_06440) - 1255527..1256564 (-) 1038 WP_049518378.1 M42 family metallopeptidase -
  RIN70_RS06445 (RIN70_06445) - 1256631..1256945 (-) 315 WP_239683211.1 NADAR family protein -
  RIN70_RS06450 (RIN70_06450) - 1257064..1257708 (-) 645 WP_049518377.1 hypothetical protein -
  RIN70_RS06455 (RIN70_06455) - 1257742..1258179 (-) 438 WP_239665668.1 hypothetical protein -
  RIN70_RS06460 (RIN70_06460) - 1258430..1258804 (-) 375 WP_080983027.1 hypothetical protein -
  RIN70_RS06465 (RIN70_06465) - 1258821..1259009 (-) 189 WP_049472572.1 hypothetical protein -
  RIN70_RS06470 (RIN70_06470) - 1259013..1259318 (-) 306 WP_003007809.1 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73543.18 Da        Isoelectric Point: 5.4200

>NTDB_id=878875 RIN70_RS06435 WP_313790457.1 1253007..1254992(-) (amiA) [Streptococcus parasanguinis strain 30.8.10]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYVSDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREVYAAQLNGKDGASKIIRNLYIPPTFVQANGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEADGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENVVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVMPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTSADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=878875 RIN70_RS06435 WP_313790457.1 1253007..1254992(-) (amiA) [Streptococcus parasanguinis strain 30.8.10]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCTCTCCTTTCAGCAGGTATCCTAGCGGCTTGTTCTGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGCCAAAAATTCTCATATGTCTATGAGACGGAGCCTGAAAACTTGAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACAGGAAACTTGATTGATGGCTTGTTTGAAAATGACAAATACGGTAACTTGATT
CCATCTCTTGCAAAAGATTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGACGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTAACAGCTAAAGATTTCGTCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATCACTTTCCCTGTCAACGAAAAATTCGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGACACCAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACGTCTCAGATGTAAAATTGGAATTCTACGATGGACAAGACCAAAGTAAACTGGCGAAATC
ATTCGGTGAAAATGCTCTTAGCTTGGCAAAACTCTTCCCAACTGGATCTGGTTACTCAGAGCAAGCCAAAGAATTTAAAG
ATGAAATCACCTACACTCCTCAAGATGCTGCTTCTTATGTCATTGGTACCAACATAGACCGTCAATCTTACAAACACACA
GCTAAAAAGACCGATGAAGAAAAACAATCTACTAAGAAAGCCCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGTTTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTAATGGTAAGACCTTTGGTGAAATGGTGAAAACACAATTGGATACCTATGGAGATGAGTGGAAA
TCTACTAAACTAGATGATGGTCAAAACGGTCTCTTCGATGCGAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGATGGTGTGAAATTCCCAATTCACATCGATATGCCTGTGGACCAAACCACTCCATCAAGAGTTCAACGGG
TGCAATCTTTCAAACAATCAGTTGAAGAAGCGCTTGGTAAAGAAAATGTCGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCACCAAATGCGGCTGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTATGAAAAATATGCGGCTGCGCAAGCTTGGTTGACTGATAGCGCCCTTGTTATGCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGACAAAGCTGTGACAAGTGCTGATTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAATAAAAAAGCACAAGAAGATCTTAAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.251

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

57.1

100

0.572
  amiA3 Streptococcus thermophilus LMG 18311

56.647

100

0.567