Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RIN70_RS03860 Genome accession   NZ_CP134147
Coordinates   742036..743838 (+) Length   600 a.a.
NCBI ID   WP_070673837.1    Uniprot ID   A0A6I3P0X9
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 737036..748838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03840 (RIN70_03840) - 737600..738946 (+) 1347 WP_049490513.1 DUF1958 domain-containing protein -
  RIN70_RS03845 (RIN70_03845) - 739017..740189 (+) 1173 WP_129824304.1 MFS transporter -
  RIN70_RS03850 (RIN70_03850) - 740357..740938 (+) 582 WP_070673835.1 lipoprotein -
  RIN70_RS03855 (RIN70_03855) coiA 741013..741963 (+) 951 WP_313790696.1 competence protein CoiA family protein Machinery gene
  RIN70_RS03860 (RIN70_03860) pepF 742036..743838 (+) 1803 WP_070673837.1 oligoendopeptidase F Regulator
  RIN70_RS03865 (RIN70_03865) - 743840..744559 (+) 720 WP_049496750.1 O-methyltransferase -
  RIN70_RS03870 (RIN70_03870) prsA 744632..745576 (+) 945 WP_313790697.1 peptidylprolyl isomerase PrsA -
  RIN70_RS03875 (RIN70_03875) - 745830..746315 (+) 486 WP_003012021.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69212.05 Da        Isoelectric Point: 4.6017

>NTDB_id=878868 RIN70_RS03860 WP_070673837.1 742036..743838(+) (pepF) [Streptococcus parasanguinis strain 30.8.10]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLATDIKAASHYAGHLLDSAQTLLDTTNAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKTFVSEVPALEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVAAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=878868 RIN70_RS03860 WP_070673837.1 742036..743838(+) (pepF) [Streptococcus parasanguinis strain 30.8.10]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCAAGCTTAGCTACAGATATTAAAGCAGCAAGCCACTATGCTGGCCATTTGTTGGATTCAGCGCAAACAC
TGTTGGATACAACCAATGCATATTTGGAATTGAGTCGTCGTTTAGAAAAGGTCTACGTCTATGCCCATATGAAAAATGAC
CAAGACACACGAGTGGCTAAATACCAAGAGTACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTAGGTGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAATACAAGACCTTTGTGAGTGAAGTTCCAGCCTTGGAACAAT
ATGGTCATTATTTTGATCGTTTGCTAGAGAAAAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCTGGGGGTGAAACCTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCAACTGTGCATGATGA
CAAGGGCGAAGAGGTTCAATTAACCCATGGAAACTATATTTCTTTGGTAGAATCAAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGCCTCTACAAGGTTTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTGAAAGTTCAC
AACTTTAATGCCAAAGTTCGCAAATTCTCATCTGCCCGTGAAGCGGCCCTTTCTGAAAACTTTGTACCAGAAAGTGTTTA
TGATAGCTTGGTGGCAGCGGTCAACAAACACTTGCCACTCTTGCAACGCTATGTGCAATTGCGTTCAAAAATTCTAGGAA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCCGATACAGACTACAAGTTTACCTATGAAGAATCGTTGGCC
AAAGCAGAAGAAGTCTTGGCTGTTTTGGGTGAGGACTACCTTTCTCGTGTGAAACGTGCCTTTAGCGAACGGTGGATTGA
TGTGCATGTCAACCAAGGAAAACGCTCAGGTGCCTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAGCCTTATGTCTATGGGGACTATTCCATCTTCCTTGCCGAAATCGCCTCTACAACCAATGAAAATATCCTGACCGAACG
TCTGTTAGAAGAAGTAGAAGACGATGCAACTCGTTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACCGTCT
TCCGTCAAACGCAGTTTGCTGAATTTGAGCATGCCATCCATAAAGCAGACCAAGAAGGTACCGTTTTGACTAGTGAGTTC
TTGAACAACCTTTATGCAGAGCTCAATGAAAAATACTATGGTCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTATGTCTTCCAATATTCAACAGGTTTTGCAGCAGCTTCAGCCTTAGCTG
AAAAGATTGTTCATGGAACACAAGAAGATCGTGATAAATATATCGACTACTTGAAAGCTGGAAATTCTGATTATCCACTC
AATGTCATCCGCAAAGCAGGTGTGGATATGGAAAAAGAAGACTACTTGGACGCAGCCTTTGCGGTCTTTGAACGTCGGTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3P0X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.631

99.333

0.692