Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RIN70_RS03990 Genome accession   NZ_CP134147
Coordinates   776055..776894 (+) Length   279 a.a.
NCBI ID   WP_049515169.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 771055..781894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03960 (RIN70_03960) - 771310..772191 (+) 882 WP_155199440.1 F0F1 ATP synthase subunit gamma -
  RIN70_RS03965 (RIN70_03965) atpD 772277..773683 (+) 1407 WP_049486331.1 F0F1 ATP synthase subunit beta -
  RIN70_RS03970 (RIN70_03970) - 773697..774116 (+) 420 WP_003002471.1 F0F1 ATP synthase subunit epsilon -
  RIN70_RS03975 (RIN70_03975) - 774213..774443 (+) 231 WP_003006458.1 DUF1146 family protein -
  RIN70_RS03980 (RIN70_03980) murA 774510..775793 (+) 1284 WP_049515168.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RIN70_RS03985 (RIN70_03985) - 775783..775971 (+) 189 WP_003006464.1 DNA-directed RNA polymerase subunit beta -
  RIN70_RS03990 (RIN70_03990) endA 776055..776894 (+) 840 WP_049515169.1 DNA/RNA non-specific endonuclease Machinery gene
  RIN70_RS03995 (RIN70_03995) - 776976..777698 (+) 723 WP_155199441.1 M57 family metalloprotease -
  RIN70_RS04000 (RIN70_04000) - 777803..779710 (+) 1908 WP_045759258.1 ABC-F family ATP-binding cassette domain-containing protein -
  RIN70_RS04005 (RIN70_04005) - 779915..780271 (+) 357 WP_045759259.1 hypothetical protein -
  RIN70_RS04010 (RIN70_04010) - 780276..781151 (+) 876 WP_313790701.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30387.83 Da        Isoelectric Point: 9.4819

>NTDB_id=878870 RIN70_RS03990 WP_049515169.1 776055..776894(+) (endA) [Streptococcus parasanguinis strain 30.8.10]
MAKQTVSKRTKQTLAGFVVATALAIGGYYFNQPTVKEATDQVVSVVTSSQQETPSKELASSVLTKSARSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDRDATGSGLTDWKPAGWHQVHNLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWSNQANDPHSTGQNYYETLVRKALDKNKRIRYRVTLIYNHPEDLIPL
GSQIEAKSSDGSLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=878870 RIN70_RS03990 WP_049515169.1 776055..776894(+) (endA) [Streptococcus parasanguinis strain 30.8.10]
ATGGCAAAACAAACAGTAAGCAAACGAACCAAACAAACCCTAGCGGGCTTTGTGGTCGCAACGGCCCTAGCTATCGGGGG
CTATTATTTTAATCAACCGACGGTGAAAGAAGCGACGGATCAGGTTGTTTCGGTGGTGACTAGTAGCCAACAAGAAACAC
CTAGTAAAGAGTTAGCTAGCTCTGTACTAACGAAATCTGCCCGTTCACAATTAGGGAATGACTTGGAATGGAACGGTGCT
GGAGCCTTTGTAGTTAAGGGAAATCGCACAGATCTGGATGCCAGCGTGGCTAGTCAACCCTATGCGGATAACAAGACAAA
AGAAGTGAATGGAAAGACCGTACCGACGGTTGCGAACGCTATTATGACCAAGGCGACTCGCCAGTACAGAGATCGGGATG
CAACAGGTAGTGGCCTAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCATAATCTGTCAGGCGAGTATGACCATGCT
GTGGATCGGGGCCACCTATTGGGCTACGCCTTGATCGGCAATCTCAAAGGTTTTGATGCCTCGACTAGCAATCCCAAAAA
TATCGCTGTGCAAACGGCTTGGTCCAATCAAGCCAATGATCCTCATTCCACCGGTCAAAACTACTATGAGACCCTGGTTC
GAAAAGCACTGGATAAGAACAAGCGGATCCGCTATCGGGTGACCTTGATCTACAACCATCCAGAAGATCTGATTCCATTA
GGATCACAGATCGAAGCCAAATCGAGTGATGGGAGCCTTGAGTTCAATGTCTTTGTTCCCAATGTTCAAAGTGGGATTAG
CCTGGATTATCAGACAGGCAAAGTAACCGTTCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.768

98.925

0.631
  endA Streptococcus pneumoniae D39

63.768

98.925

0.631
  endA Streptococcus pneumoniae R6

63.768

98.925

0.631
  endA Streptococcus pneumoniae TIGR4

63.768

98.925

0.631