Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RIN70_RS03640 Genome accession   NZ_CP134147
Coordinates   694242..696209 (+) Length   655 a.a.
NCBI ID   WP_031574467.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 689242..701209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03610 (RIN70_03610) - 689646..690086 (+) 441 WP_195623258.1 ASCH domain-containing protein -
  RIN70_RS03615 (RIN70_03615) glmU 690190..691569 (+) 1380 WP_313790688.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  RIN70_RS03620 (RIN70_03620) - 691579..692124 (+) 546 WP_313790689.1 NUDIX hydrolase -
  RIN70_RS03625 (RIN70_03625) macP 692136..692471 (+) 336 WP_003006241.1 cell wall synthase accessory phosphoprotein MacP -
  RIN70_RS03630 (RIN70_03630) - 692496..693188 (+) 693 WP_201087838.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  RIN70_RS03635 (RIN70_03635) nth 693353..693976 (+) 624 WP_004219781.1 endonuclease III -
  RIN70_RS03640 (RIN70_03640) amiA3 694242..696209 (+) 1968 WP_031574467.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS03645 (RIN70_03645) - 696378..696587 (+) 210 Protein_666 PaaI family thioesterase -
  RIN70_RS03650 (RIN70_03650) - 696694..697287 (-) 594 WP_031577145.1 helix-turn-helix domain-containing protein -
  RIN70_RS03655 (RIN70_03655) - 697458..697844 (-) 387 WP_003014423.1 VOC family protein -
  RIN70_RS03660 (RIN70_03660) - 697856..698683 (-) 828 WP_129299564.1 exodeoxyribonuclease III -
  RIN70_RS03665 (RIN70_03665) - 698819..699271 (+) 453 WP_313790690.1 DUF3290 family protein -
  RIN70_RS03670 (RIN70_03670) - 699268..699900 (+) 633 WP_024055948.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72261.62 Da        Isoelectric Point: 6.1533

>NTDB_id=878863 RIN70_RS03640 WP_031574467.1 694242..696209(+) (amiA3) [Streptococcus parasanguinis strain 30.8.10]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDITSNLVDGLLENDQYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFMIQNSIKGLDAYVKGETKDFKTVGVKA
LDDHTIQYTLVHPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIQLVKNKDYYDAKNV
HIDHVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKNFRQAVNFAFDRKSYAAQVSGSDAAEKTLRSTLVPPTYVQVNGEDFGKVVEKQLVTYGDQWKGVSLDD
GQTSLYNPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWQPDYQDPSTYLESISPVNGSVFYYLGIDAGSNNPAIAAVGLDQYANMLKDADAELLDQAKRY
EKYAAAQAWLTDSSITLPTVSNGGAPMLQRTVPYSRASSWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=878863 RIN70_RS03640 WP_031574467.1 694242..696209(+) (amiA3) [Streptococcus parasanguinis strain 30.8.10]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTCTTAGCAGCGTGTGGCGGTGGTAG
TAGCAATCAAGCAACCTACTCATTCGTCTATTCAGCGGATCCAAATACATTGGATTACATCGCTGCAACTCGTACAACGA
CTTCAGATATCACAAGTAACCTTGTAGATGGTCTTCTTGAAAATGACCAATACGGAAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACAAGTGAGGGTGA
AGAGTATGGTGCTGTAACAGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCAAAATCAGAAGGCCTCTTCA
TGATTCAAAATTCAATCAAAGGTTTGGATGCCTATGTAAAAGGAGAAACGAAGGACTTTAAAACAGTTGGAGTCAAAGCT
TTAGATGACCACACCATTCAATATACTTTGGTCCATCCAGAAAGCTTCTGGAACTCTAAAACAACTTCAGGTGTTCTTTT
CCCAGTCAATGCGGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCTTTGAAACCTAGCAGCATCTTATATAATGGTC
CATATTACTTGAAATCATTGACTTCAAAATCTGAGATCCAATTGGTCAAGAACAAAGATTATTACGATGCGAAAAATGTT
CATATCGATCATGTCAAATTGACCTTTAACGATGGATCAAACCCAGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
CTCCTTTGCCTCTGTTATGCCAAACAGTTCGACGTATAAGAGCGTCAAGAAAAACTTTGGTGACAACATTGTCTACGGTT
TGCAATTAGGAACATCTTACTACCTTGGATTCAACTTGGATCGTCAAAAATATGACCACACAGCCAAAACAACGGATGAA
CAAAAAGCTTCTACCAAGAAAGCAATCTTGAACAAGAACTTCCGTCAAGCGGTGAACTTTGCCTTTGACCGCAAATCTTA
TGCGGCACAAGTATCAGGATCTGATGCAGCTGAGAAGACCCTTCGTAGTACCTTGGTGCCACCAACTTATGTCCAAGTCA
ATGGAGAAGATTTTGGTAAAGTGGTTGAAAAACAATTGGTTACCTATGGAGACCAATGGAAGGGTGTGAGCCTGGACGAT
GGCCAAACAAGCCTGTATAACCCAGAAAAAGCCAAAGCTTCATTTGCAAAAGCCAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTACATTGTCAGCCAAGTGGACAATAGCATGGTCCAACAAGCGAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTTGTGGTGGATCTTCAAAAGGTATCGGATGATGATTTCCAAAATATCACC
TACTTCAGCGATACAGCTGCTGCAAGAGACTACGATATCTCAGGCGGTGGATGGCAACCTGACTACCAAGACCCATCTAC
TTATCTGGAAAGTATCAGCCCAGTAAATGGTTCTGTCTTCTATTATCTTGGTATTGATGCAGGTTCAAACAACCCAGCCA
TTGCAGCAGTTGGTTTGGATCAATATGCGAACATGTTGAAAGACGCCGATGCTGAATTGTTGGATCAAGCAAAACGCTAT
GAAAAATATGCAGCAGCGCAAGCTTGGTTGACAGATAGCTCGATTACGCTTCCAACTGTCTCAAATGGTGGTGCTCCAAT
GCTTCAACGGACCGTACCATACAGCCGTGCTTCTTCATGGGTAGGTACTAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCTAAAGATGTTGTCACAACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.182

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

53.03

100

0.534
  amiA Streptococcus salivarius strain HSISS4

52.352

100

0.527