Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RIN70_RS03515 Genome accession   NZ_CP134147
Coordinates   674197..676161 (-) Length   654 a.a.
NCBI ID   WP_313790681.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 669197..681161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03495 (RIN70_03495) - 669264..670382 (+) 1119 WP_313790680.1 DUF4767 domain-containing protein -
  RIN70_RS03500 (RIN70_03500) - 670596..671159 (+) 564 WP_070505864.1 hypothetical protein -
  RIN70_RS03505 (RIN70_03505) - 671334..672101 (+) 768 WP_247919513.1 ABC transporter ATP-binding protein -
  RIN70_RS03510 (RIN70_03510) - 672094..674097 (+) 2004 WP_313790771.1 FtsX-like permease family protein -
  RIN70_RS03515 (RIN70_03515) amiA 674197..676161 (-) 1965 WP_313790681.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS03520 (RIN70_03520) - 676420..676749 (+) 330 WP_023917534.1 PadR family transcriptional regulator -
  RIN70_RS03525 (RIN70_03525) - 676743..677543 (+) 801 WP_313790682.1 hypothetical protein -
  RIN70_RS03530 (RIN70_03530) - 677540..678370 (+) 831 WP_155199407.1 hypothetical protein -
  RIN70_RS03535 (RIN70_03535) - 678607..679998 (+) 1392 WP_313790683.1 amino acid permease -
  RIN70_RS03540 (RIN70_03540) - 680103..680339 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  RIN70_RS03545 (RIN70_03545) - 680332..681030 (+) 699 WP_313790684.1 3-oxoacyl-ACP reductase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72494.52 Da        Isoelectric Point: 5.0338

>NTDB_id=878862 RIN70_RS03515 WP_313790681.1 674197..676161(-) (amiA) [Streptococcus parasanguinis strain 30.8.10]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAKDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPNGILYNGAYILKSFTSKSQIELEKNPDYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYSPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNNTKTALQNKNFRQALNFALDRTSYSAQVNGKDGASKTLRTLLVPPTFVQADGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKAELQSQGVQFPIHIDYVVDQSSNALVQQADSMKSSIETALGKDNVVIDVQKLSTDDADN
ATYFAQSPDQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNQYKELLDAANAEKLDTNA
RYEKYAAAQAWLTENAMVLPIYSKGGVPSITKVTPFSAANSAIGIKGETSFFKYQKVQDKTVTTADYEKTYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=878862 RIN70_RS03515 WP_313790681.1 674197..676161(-) (amiA) [Streptococcus parasanguinis strain 30.8.10]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTCGCCGCGGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAAGGGACTACCTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACTACCAACTTGGTCGATGGTTTGTTTGAAAACGACCAATACGGTAACCTAGTGCCTGCTCTT
GCTGAGGACTGGTCTGTTTCAAAAGACGGTCTGACTTATACCTACAAGCTTCGAAAAGACGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCAAAAGATTTCGTGACATCTCTGAAATATGTAGCAGATAAAAAATCTGATGCAC
TTTACTTGGTTCAAAACTCAGTCAAAGGCTTGGATGACTATGTGAACGGAAAAACCAAAGACTTCTCAACTGTTGGAGTC
AAAGCTGTTGATGATCACACTCTTCAATATACTTTGAACCAACCTGAATCTTTCTGGAATTCTAAATTGACGACTGCTAC
CATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGATTTCGGTAGCGTGAAACCAAATGGGATCCTCTACA
ATGGTGCCTACATTTTGAAGTCCTTCACTTCAAAATCACAAATCGAGTTGGAAAAGAACCCTGATTACTACGACAAGAAA
AATGTTCACATCGATACCGTTAAATTAACTTACTTCGATGGATCCGACCAAGACTACCTTGCTCGTAACTTCTCAGATGG
TAACCTATCTACTGCTCGTCTCTTCCCAACAAGCTCAACCTACAGTACGATTGAGAAGAAATTCAAGGATAACATCGTTT
ATTCCCCACAAGATTCTACTGTTTACTACGCTTACTTCAACGTCAACCGTCAAAATTACGGCCATACGAAGAAGACATCT
GATGAGCAAAAGAACAACACGAAGACAGCCCTTCAAAACAAAAACTTCCGTCAAGCTTTGAACTTCGCTTTGGATAGAAC
TTCCTACAGCGCTCAAGTTAACGGGAAAGACGGAGCATCAAAAACTCTACGTACCCTTCTAGTTCCACCGACATTTGTGC
AAGCAGACGGGAAAGACTTCGGTACTCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTGAGCTTT
GCTGACGCGCAAGATAGCTTGCATAATGCGGATAAAGCCAAAGCGGAACTTGAAAAAGCGAAGGCTGAATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTATGTCGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGTTCTATTGAAACAGCTCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCAGACAAC
GCTACTTACTTCGCCCAATCACCAGATCAAAAAGACTTTGACATGGATATCACTGGTTGGGGACCTGACTTCCAAGACCC
ATCTACTTACTTGGATATCTTGAACCCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CGCTCATCGAAAAAATTGGTTTGAACCAATACAAAGAATTGTTGGATGCTGCTAATGCTGAAAAATTGGATACCAATGCG
CGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACTGAAAACGCAATGGTACTTCCAATCTACTCTAAGGGTGGAGT
GCCATCTATCACGAAGGTAACGCCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGTGAAACAAGCTTCTTCAAAT
ACCAGAAAGTGCAAGACAAGACAGTCACAACGGCTGACTACGAAAAAACTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.383

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.083

100

0.555
  amiA3 Streptococcus thermophilus LMD-9

55.083

100

0.555