Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RIN70_RS02375 Genome accession   NZ_CP134147
Coordinates   453203..454270 (+) Length   355 a.a.
NCBI ID   WP_003010293.1    Uniprot ID   A0A3R9IVN1
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 448203..459270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS02360 (RIN70_02360) amiA3 448707..450692 (+) 1986 WP_070595567.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS02365 (RIN70_02365) amiC 450766..452265 (+) 1500 WP_118095846.1 ABC transporter permease Regulator
  RIN70_RS02370 (RIN70_02370) amiD 452265..453191 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RIN70_RS02375 (RIN70_02375) amiE 453203..454270 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS02380 (RIN70_02380) amiF 454281..455207 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39500.04 Da        Isoelectric Point: 4.5938

>NTDB_id=878852 RIN70_RS02375 WP_003010293.1 453203..454270(+) (amiE) [Streptococcus parasanguinis strain 30.8.10]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELEEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=878852 RIN70_RS02375 WP_003010293.1 453203..454270(+) (amiE) [Streptococcus parasanguinis strain 30.8.10]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTATTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGAAGAAGGTGAAGTTCTTGCCTTAGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACCGGAATGTTAGAAGATAACGGCCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGTTCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
AAGAAATGGCTTTGGACTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTGGCCTGCCGTCCAGATATCTTGATCTGTGATGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAAGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTATACTCTATTCCAGGGACTCCGCCATCATTGTATGCCCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGATTATGCGATGCAGATTGATTTTGAAGAAGAGGCACCTGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACCCACATTACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9IVN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.153

99.437

0.817
  amiE Streptococcus thermophilus LMD-9

82.153

99.437

0.817
  oppD Streptococcus mutans UA159

57.681

97.183

0.561