Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RIN70_RS02365 Genome accession   NZ_CP134147
Coordinates   450766..452265 (+) Length   499 a.a.
NCBI ID   WP_118095846.1    Uniprot ID   A0A414CGH7
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 445766..457265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS02350 (RIN70_02350) sufB 445789..447201 (+) 1413 WP_070674939.1 Fe-S cluster assembly protein SufB -
  RIN70_RS02355 (RIN70_02355) - 447260..448501 (-) 1242 WP_070674942.1 serine hydrolase -
  RIN70_RS02360 (RIN70_02360) amiA3 448707..450692 (+) 1986 WP_070595567.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS02365 (RIN70_02365) amiC 450766..452265 (+) 1500 WP_118095846.1 ABC transporter permease Regulator
  RIN70_RS02370 (RIN70_02370) amiD 452265..453191 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RIN70_RS02375 (RIN70_02375) amiE 453203..454270 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS02380 (RIN70_02380) amiF 454281..455207 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55944.99 Da        Isoelectric Point: 10.1159

>NTDB_id=878850 RIN70_RS02365 WP_118095846.1 450766..452265(+) (amiC) [Streptococcus parasanguinis strain 30.8.10]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATNANEKIYKKYIEKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKNSWFDSISTAA
LTFMMSLPTIALVYIVRLAGSFFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGAIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=878850 RIN70_RS02365 WP_118095846.1 450766..452265(+) (amiC) [Streptococcus parasanguinis strain 30.8.10]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAGAATGACCCCAACTACAATAAAGTAGCGAAGACAAAAGATTCGAAGA
TCAACTACGAAAATACAGTCTATGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCCGTAACGGTTGATGCGACAAATGCCAATGAAAAGATCTACAAAAAATATATTGAAAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTCCCAGAAAGTAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTTATTA
GCTTCTATGCGAATTTGATTCAATTTGATCATCCAGGTTGGGTGAAAGATGCCTCGAATCCAAATCTTAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGGTGGTCTGTAGTGGGTTCTGGTACGAAACACAAATACCTCTTGTACTTTAATGG
TCAGTTCCCATATGTACACCAAAACTTTGTGACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTTATTACCCAAGGACAAGGAACGACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCCATC
GATATCTACTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGATATCAGTCGATTTGGTAAAGGGGATGCCTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CCTACTTGATTGCGATCCCACTAGGATCTTATATGGCTCTTTTCAAGAACTCATGGTTTGATAGCATCTCTACTGCGGCC
TTGACATTTATGATGTCTCTCCCAACCATTGCCCTTGTCTATATCGTGCGTCTAGCAGGTTCATTCTTTGGACTTCCAGA
CTCATTCCCAGTACTTGGAGCACAGGACTGGCGTTCATATGTATTGCCGTCTCTGATTCTTGGTTTATTGAGTGCGCCAT
TTATCGCCGTTTGGATTCGTCGTTATATGATCGATATTCACTCTCAGGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCACTAGTTTCTGGAATTCCAGGGGCTATCAT
TGGAGTTATCTCAGGTGCGACGTTGACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A414CGH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.343

100

0.713
  amiC Streptococcus thermophilus LMD-9

71.142

100

0.711
  amiC Streptococcus thermophilus LMG 18311

71.142

100

0.711