Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RIN70_RS02380 Genome accession   NZ_CP134147
Coordinates   454281..455207 (+) Length   308 a.a.
NCBI ID   WP_003010296.1    Uniprot ID   V8BAC4
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 449281..460207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS02365 (RIN70_02365) amiC 450766..452265 (+) 1500 WP_118095846.1 ABC transporter permease Regulator
  RIN70_RS02370 (RIN70_02370) amiD 452265..453191 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RIN70_RS02375 (RIN70_02375) amiE 453203..454270 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS02380 (RIN70_02380) amiF 454281..455207 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35017.00 Da        Isoelectric Point: 6.2915

>NTDB_id=878853 RIN70_RS02380 WP_003010296.1 454281..455207(+) (amiF) [Streptococcus parasanguinis strain 30.8.10]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGRKINGKNSHS
EKSELIRKIQMIFQDPAASLNERATVDYIISEGLINHHLFNSEEERQEKVKNIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPIHPYTQSLLSAVPIPDPILERKKVLKIYDPEQHDYSEDKPQMVEIKPGHYVWANKAEENKYRQEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=878853 RIN70_RS02380 WP_003010296.1 454281..455207(+) (amiF) [Streptococcus parasanguinis strain 30.8.10]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTCGTTGCTGTAAAGAA
TGCCAATTTCTTCATTAATAAGGGAGAAACTTTCTCTCTTGTTGGTGAATCAGGAAGTGGGAAGACAACAATTGGACGTG
CTATCATCGGTTTGAATGATACAAGTGCTGGAGAAATTATTTATGACGGTCGCAAGATCAACGGAAAAAACTCTCATAGT
GAAAAATCAGAGTTGATCCGTAAAATTCAAATGATCTTCCAAGACCCAGCAGCAAGTTTGAATGAACGTGCAACAGTTGA
TTATATTATCTCTGAAGGTTTGATCAACCACCATTTGTTTAACAGCGAAGAAGAACGTCAGGAAAAAGTAAAAAATATTA
TGCATGAAGTTGGGCTTCTAGCAGAACATTTGACACGTTATCCTCACGAATTCTCAGGTGGTCAACGTCAACGGATCGGT
ATTGCCCGTGCACTTGTCATGGAACCGGAATTTGTCATTGCGGATGAACCAATCTCAGCCCTTGACGTTTCAGTACGTGC
GCAGGTCTTGAACCTTTTGAAAAAATTCCAAAGAGAATTAGGCTTGACCTACCTCTTTATCGCCCATGACTTGTCAGTTG
TGCGCTTCATTTCTGACCGTATTGCAGTTATCTATAAAGGGGTTATTGTAGAAGTAGCAGAAACTGAAGAGCTATTTAAC
CACCCAATCCATCCATACACCCAATCCCTGCTTTCAGCGGTCCCAATTCCAGATCCAATTCTAGAACGTAAAAAAGTTCT
AAAAATCTACGATCCAGAACAACATGATTACTCTGAAGATAAACCACAAATGGTTGAAATTAAACCAGGTCATTATGTAT
GGGCTAACAAAGCTGAAGAAAACAAATACAGACAAGAATATAAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BAC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMG 18311

84.314

99.351

0.838
  amiF Streptococcus thermophilus LMD-9

83.987

99.351

0.834