Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   WOC61_RS00610 Genome accession   NZ_CP150751
Coordinates   112248..112670 (+) Length   140 a.a.
NCBI ID   WP_258922346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22698     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 107248..117670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC61_RS00570 (WOC61_00565) - 107292..108278 (+) 987 WP_000161314.1 ROK family glucokinase -
  WOC61_RS00575 (WOC61_00570) - 108278..108607 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  WOC61_RS00580 (WOC61_00575) - 108604..109227 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  WOC61_RS00585 (WOC61_00580) comGA 109279..110253 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  WOC61_RS00590 (WOC61_00585) comGB 110225..111295 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  WOC61_RS00595 (WOC61_00590) comGC 111309..111620 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  WOC61_RS00600 (WOC61_00595) comGD 111598..112044 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  WOC61_RS00605 (WOC61_00600) comGE 112031..112330 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  WOC61_RS00610 (WOC61_00605) comGF 112248..112670 (+) 423 WP_258922346.1 competence type IV pilus minor pilin ComGF Machinery gene
  WOC61_RS00615 (WOC61_00610) - 112748..113920 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  WOC61_RS00620 (WOC61_00615) - 113973..114077 (+) 105 Protein_122 type IV pilus minor pilin ComGF family protein -
  WOC61_RS00625 (WOC61_00620) - 114174..114320 (+) 147 WP_001789879.1 hypothetical protein -
  WOC61_RS00630 (WOC61_00625) - 114310..114834 (+) 525 WP_001015117.1 shikimate kinase -
  WOC61_RS00635 (WOC61_00630) gcvT 114993..116084 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  WOC61_RS00640 (WOC61_00635) gcvPA 116104..117450 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16413.66 Da        Isoelectric Point: 10.0943

>NTDB_id=878474 WOC61_RS00610 WP_258922346.1 112248..112670(+) (comGF) [Staphylococcus aureus strain TUM22698]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVDKVRIIV

Nucleotide


Download         Length: 423 bp        

>NTDB_id=878474 WOC61_RS00610 WP_258922346.1 112248..112670(+) (comGF) [Staphylococcus aureus strain TUM22698]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTTGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTG
ATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(66-138)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

95

0.95
  comGF Staphylococcus aureus N315

96.241

95

0.914