Detailed information NTG0878469

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RI644_RS06215
• Genome accession: NZ_CP134058
• Coordinates: 271424..272431 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain VIC11-A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 266424..277431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI644_RS06190 (RI644_06190)	rraA	266999..267514 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
RI644_RS06195 (RI644_06195)	-	267589..268506 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RI644_RS06200 (RI644_06200)	hslU	268610..269941 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
RI644_RS06205 (RI644_06205)	hslV	270007..270564 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
RI644_RS06210 (RI644_06210)	-	270701..271252 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
RI644_RS06215 (RI644_06215)	cytR	271424..272431 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
RI644_RS06220 (RI644_06220)	priA	272737..274941 (-)	2205	WP_001247858.1	primosomal protein N'	-
RI644_RS06225 (RI644_06225)	rpmE	275196..275414 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
RI644_RS06230 (RI644_06230)	-	275722..276999 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
RI644_RS06235 (RI644_06235)	metJ	277110..277427 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=878469 RI644_RS06215 WP_000224452.1 271424..272431(-) (cytR) [Vibrio cholerae strain VIC11-A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=878469 RI644_RS06215 WP_000224452.1 271424..272431(-) (cytR) [Vibrio cholerae strain VIC11-A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904