Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RGB74_RS00095 Genome accession   NZ_CP134049
Coordinates   16772..17314 (+) Length   180 a.a.
NCBI ID   WP_310760963.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 11772..22314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS00070 (RGB74_00070) - 11972..12790 (+) 819 WP_310762944.1 mechanosensitive ion channel family protein -
  RGB74_RS00075 (RGB74_00075) - 12804..13004 (+) 201 WP_310760960.1 DUF951 domain-containing protein -
  RGB74_RS00080 (RGB74_00080) - 13022..15025 (+) 2004 WP_310760961.1 molybdopterin-dependent oxidoreductase -
  RGB74_RS00085 (RGB74_00085) ychF 15162..16259 (+) 1098 WP_310760962.1 redox-regulated ATPase YchF -
  RGB74_RS00090 (RGB74_00090) rpsF 16460..16750 (+) 291 WP_310260412.1 30S ribosomal protein S6 -
  RGB74_RS00095 (RGB74_00095) ssbA 16772..17314 (+) 543 WP_310760963.1 single-stranded DNA-binding protein Machinery gene
  RGB74_RS00100 (RGB74_00100) rpsR 17380..17613 (+) 234 WP_310760964.1 30S ribosomal protein S18 -
  RGB74_RS00105 (RGB74_00105) - 18061..19005 (+) 945 WP_310760965.1 YybS family protein -
  RGB74_RS00110 (RGB74_00110) - 19017..20990 (+) 1974 WP_310760966.1 DHH family phosphoesterase -
  RGB74_RS00115 (RGB74_00115) rplI 20987..21430 (+) 444 WP_310760967.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19910.74 Da        Isoelectric Point: 4.9528

>NTDB_id=878352 RGB74_RS00095 WP_310760963.1 16772..17314(+) (ssbA) [Bacillus sp. NEB1478]
MLNRVVLVGRLTKDPELKYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRMQTR
SYENNQGQRVYVTEVMAESVQFLEPKNANAGGQQYQGGNNFGGPSNDRGFGQQNQNRSYGSDNGFGGQQQQQNPKRNNFN
DDPFANDGTPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=878352 RGB74_RS00095 WP_310760963.1 16772..17314(+) (ssbA) [Bacillus sp. NEB1478]
ATGCTAAATCGTGTAGTACTGGTGGGACGTTTAACAAAAGACCCAGAATTAAAGTACACTCCAAACGGTGTGGCAGTAGC
TAATTTCACACTTGCAGTCAATCGGCCTTTTTCGAATCAGCAAGGTGAGCGCGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGAAAGCCCGCTGAAAACGTGGCAAATTTCCTTAAAAAAGGATCACTTGCCGGAGTAGATGGACGTATGCAAACACGT
TCTTACGAGAACAATCAGGGTCAAAGAGTGTATGTTACTGAAGTAATGGCAGAGAGCGTTCAGTTCCTAGAACCGAAAAA
TGCTAATGCTGGAGGCCAGCAGTATCAAGGCGGCAACAACTTTGGTGGACCATCAAATGACCGCGGATTTGGCCAACAAA
ATCAGAACCGCAGCTATGGAAGTGACAACGGATTTGGAGGACAGCAGCAACAGCAGAATCCAAAACGCAATAACTTCAAC
GATGACCCGTTTGCAAATGATGGCACACCGATCGACATTTCTGATGACGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.78

100

0.706
  ssb Latilactobacillus sakei subsp. sakei 23K

57.143

100

0.578
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378