Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RE424_RS06405 Genome accession   NZ_CP134047
Coordinates   1288947..1289819 (+) Length   290 a.a.
NCBI ID   WP_000931872.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1283947..1294819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS06385 ylqF 1284783..1285667 (+) 885 WP_103254293.1 ribosome biogenesis GTPase YlqF -
  RE424_RS06390 - 1285651..1286418 (+) 768 WP_023913772.1 ribonuclease HII -
  RE424_RS06395 sucC 1286527..1287693 (+) 1167 WP_023913774.1 ADP-forming succinate--CoA ligase subunit beta -
  RE424_RS06400 sucD 1287715..1288623 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  RE424_RS06405 dprA 1288947..1289819 (+) 873 WP_000931872.1 DNA-processing protein DprA Machinery gene
  RE424_RS06410 topA 1289993..1292068 (+) 2076 WP_023913778.1 type I DNA topoisomerase -
  RE424_RS06415 trmFO 1292224..1293531 (+) 1308 WP_310790878.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33212.51 Da        Isoelectric Point: 8.3112

>NTDB_id=878322 RE424_RS06405 WP_000931872.1 1288947..1289819(+) (dprA) [Staphylococcus aureus strain 21SAU_AGRO3]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=878322 RE424_RS06405 WP_000931872.1 1288947..1289819(+) (dprA) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362