Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RDV49_RS09315 Genome accession   NZ_CP133988
Coordinates   1930888..1932852 (+) Length   654 a.a.
NCBI ID   WP_003006157.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain B-1756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925888..1937852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS09285 (RDV49_09285) - 1926009..1926707 (-) 699 WP_003006171.1 3-oxoacyl-ACP reductase -
  RDV49_RS09290 (RDV49_09290) - 1926700..1926936 (-) 237 WP_000141913.1 DUF2829 domain-containing protein -
  RDV49_RS09295 (RDV49_09295) - 1927041..1928432 (-) 1392 WP_003006167.1 APC family permease -
  RDV49_RS09300 (RDV49_09300) - 1928678..1929508 (-) 831 WP_003006164.1 hypothetical protein -
  RDV49_RS09305 (RDV49_09305) - 1929505..1930305 (-) 801 WP_003006161.1 hypothetical protein -
  RDV49_RS09310 (RDV49_09310) - 1930299..1930628 (-) 330 WP_023917534.1 PadR family transcriptional regulator -
  RDV49_RS09315 (RDV49_09315) amiA 1930888..1932852 (+) 1965 WP_003006157.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS09320 (RDV49_09320) - 1932952..1934955 (-) 2004 WP_003006153.1 FtsX-like permease family protein -
  RDV49_RS09325 (RDV49_09325) - 1934948..1935715 (-) 768 WP_003006150.1 ABC transporter ATP-binding protein -
  RDV49_RS09330 (RDV49_09330) - 1936041..1936610 (-) 570 WP_003006147.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72552.52 Da        Isoelectric Point: 4.9733

>NTDB_id=878181 RDV49_RS09315 WP_003006157.1 1930888..1932852(+) (amiA) [Streptococcus parasanguinis strain B-1756]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPNGILYNGPYILKSFTSKSQIELDKNPDYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYSPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNNTKTALQNKNFRQALNFALDRTSYSAQVNGKDGASKTLRTLLVPPTFVQADGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKSELQSQGVQFPIHIDYIVDQSSNALVQQADSMKSSIETALGKDNVVIDVQKLSTDDADN
ATYFAQSPEQKDFDMDITGWGPDFQDPSTYLDILNSTDGSTLTGMGLDPKKDQALIEKIGLNEYQALLDAANAEKLDTNA
RYEKYAAAQAWLTENAMVLPIYSKGGVPSITKVTPFSRANSAIGIKGETTFFKYQKVQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=878181 RDV49_RS09315 WP_003006157.1 1930888..1932852(+) (amiA) [Streptococcus parasanguinis strain B-1756]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTCGCCGCGGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAAGGGACTACCTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACAACCAACTTGGTCGATGGTTTGTTTGAAAACGATCAATACGGTAACTTAGTGCCTGCTCTT
GCTGAGGACTGGTCCGTTTCAAAAGACGGTCTCACTTATACCTACAAGCTTCGAAAAGACGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCACAAGATTTCGTGACATCTCTAAAATACGTAGCAGATAAAAAATCGGATGCTC
TTTACTTGGTTCAAAACTCAGTCAAAGGCTTGGATGACTATGTAAACGGGAAAACCAAAGACTTCTCAACTGTTGGGGTA
AAAGCTGTTGATGATCACACTCTTCAATACACTTTGAACCAACCTGAATCTTTCTGGAATTCTAAATTGACCACTGCTAC
CATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGACTTTGGTAGCGTGAAACCAAATGGTATCCTCTACA
ATGGTCCATACATTTTGAAATCCTTCACTTCAAAATCACAAATCGAGTTGGATAAAAACCCTGATTACTACGACAAGAAA
AATGTTCACATCGATACGGTTAAATTGACTTACTTCGATGGATCTGACCAAGACTATCTTGCTCGTAACTTCTCAGATGG
GAACCTATCTACTGCTCGTCTCTTCCCAACAAGCTCAACTTACAGTACGATTGAGAAGAAATTCAAGGATAACATCGTTT
ATTCCCCACAAGATTCTACTGTTTACTACGCTTACTTCAACGTCAACCGTCAAAATTACGGCCATACGAAGAAGACATCT
GATGAGCAAAAGAACAACACGAAGACAGCCCTTCAAAACAAAAACTTCCGTCAAGCTTTGAACTTCGCTTTGGATAGAAC
TTCCTACAGCGCTCAAGTTAACGGGAAAGACGGAGCATCAAAAACTCTACGTACCCTTCTAGTTCCACCGACATTTGTGC
AAGCGGACGGGAAAGACTTCGGTACGCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTTAGCTTT
GCTGACGCGCAAGATAGCTTGCATAATGCGGATAAAGCCAAAGCGGAACTTGAAAAAGCGAAATCTGAATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTATATTGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGTTCTATTGAAACAGCGCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCAGATAAC
GCTACTTATTTTGCCCAATCACCAGAGCAAAAAGACTTTGATATGGATATCACTGGTTGGGGACCTGACTTCCAAGACCC
ATCTACTTACTTGGATATCTTAAACTCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CACTCATCGAGAAAATTGGTTTGAACGAATACCAAGCATTGCTAGATGCTGCCAATGCTGAAAAATTGGATACCAATGCA
CGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACAGAAAATGCCATGGTTCTTCCAATCTACTCTAAGGGTGGAGT
TCCATCTATCACGAAGGTAACACCATTCTCAAGAGCAAATTCTGCAATTGGTATTAAAGGTGAAACAACCTTCTTCAAAT
ACCAAAAGGTTCAAGACAAGACAGTCACAACTGCTGACTACGAAAAAGCTTATAAGAATTGGTTGAAGGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.535

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.235

100

0.557