Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV49_RS09135 Genome accession   NZ_CP133988
Coordinates   1902763..1904730 (-) Length   655 a.a.
NCBI ID   WP_003006253.1    Uniprot ID   A0AAX4AWR3
Organism   Streptococcus parasanguinis strain B-1756     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897763..1909730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS09105 (RDV49_09105) - 1899071..1899703 (-) 633 WP_003006271.1 DUF421 domain-containing protein -
  RDV49_RS09110 (RDV49_09110) - 1899700..1900152 (-) 453 WP_003006267.1 DUF3290 family protein -
  RDV49_RS09115 (RDV49_09115) - 1900288..1901115 (+) 828 WP_037607808.1 exodeoxyribonuclease III -
  RDV49_RS09120 (RDV49_09120) - 1901127..1901513 (+) 387 WP_037607806.1 VOC family protein -
  RDV49_RS09125 (RDV49_09125) - 1901748..1902371 (-) 624 WP_003006259.1 hypothetical protein -
  RDV49_RS09130 (RDV49_09130) - 1902479..1902571 (+) 93 Protein_1762 VOC family protein -
  RDV49_RS09135 (RDV49_09135) amiA3 1902763..1904730 (-) 1968 WP_003006253.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS09140 (RDV49_09140) nth 1904996..1905619 (-) 624 WP_003006251.1 endonuclease III -
  RDV49_RS09145 (RDV49_09145) - 1905758..1906450 (-) 693 WP_003006246.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  RDV49_RS09150 (RDV49_09150) macP 1906475..1906810 (-) 336 WP_003006241.1 cell wall synthase accessory phosphoprotein MacP -
  RDV49_RS09155 (RDV49_09155) - 1906822..1907367 (-) 546 WP_003006238.1 NUDIX hydrolase -
  RDV49_RS09160 (RDV49_09160) glmU 1907377..1908756 (-) 1380 WP_003006235.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  RDV49_RS09165 (RDV49_09165) - 1909135..1909575 (-) 441 WP_003006232.1 ASCH domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72190.39 Da        Isoelectric Point: 5.4796

>NTDB_id=878180 RDV49_RS09135 WP_003006253.1 1902763..1904730(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
MKAKKLLALAGVSVAGAFFLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDVTSNLVDGLLENDRYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPFYLKSLTSKSEIELVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFGFDRKSYAAQVSGSDAAENTLRSTLVPPTYVQVNGEDFGKVVEKQLVTYGDQWKGVSLDD
GQTSLYNPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWAPDYQDPSTYLESISPVNGSVFYYLGIDAGSNNPAIATVGLDQYANMLKDADAELLDQGKRY
EKYAAAQAWLTDSSITLPTVSNGGSPMLQRTVPYSRAASWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=878180 RDV49_RS09135 WP_003006253.1 1902763..1904730(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTTTCTTAGCAGCGTGTGGCGGTGGTAG
TAGCAATCAAGCAACTTACTCATTCGTCTATTCAGCGGATCCAAATACCTTGGATTACATCGCTGCAACTCGTACAACAA
CTTCAGATGTCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCGATACGGAAACTTTGTGCCAAGCCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACGAGTGAAGGGGA
AGAATATGGTGCTGTAACGGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCTAAATCAGAAGGTCTTTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTACGTAAAAGGGGAAACCAAAGACTTTAACACAGTTGGTGTCAAAGCC
TTAGACGACCACACCATCCAATATACTTTGGTTCGTCCAGAAAGCTTCTGGAACTCAAAAACAACCTCAGGTGTTCTTTT
CCCAGTCAATGCGGATTTCTTGAAATCGCAAGGAAAAGATTTTGGTTCGTTGAAACCTAGCAGCATCTTATACAATGGTC
CATTCTACTTGAAATCATTGACTTCAAAATCTGAGATTGAATTGGTCAAGAACAAAGACTATTACGATGCGAAAAATGTT
CATATCGATAATGTCAAATTGACCTTTAACGATGGATCAAACCCAGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
TTCCTTTGCATCTGTTATGCCAAACAGCTCGACTTATAAGAGTGTCAAGAAAAACTTTGGCGACAACATTGTCTACGGTT
TGCAATTAGGAACATCCTACTATCTTGGATTCAACTTGGACCGTCAAAAGTATGACCACACTGCCAAAACTACGGATGAA
CAAAAAGCTTCTACCAAGAAAGCAATCCTGAACAAGGACTTCCGTCAAGCGGTGAACTTTGGTTTTGACCGCAAATCATA
TGCGGCACAAGTATCTGGATCTGATGCGGCTGAAAATACCCTTCGTAGCACTTTGGTGCCACCAACATATGTTCAAGTCA
ATGGAGAAGATTTTGGTAAGGTCGTTGAAAAACAATTGGTTACCTATGGGGATCAATGGAAGGGTGTGAGCCTGGACGAT
GGTCAAACAAGCCTTTACAATCCAGAAAAAGCCAAAGCTTCATTTGCGAAAGCCAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTACATTGTCAGCCAAGTGGACAACAGCATGGTCCAACAAGCTAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTCGTTGTGGACCTTCAAAAGGTATCGGATGATGATTTCCAAAATATCACC
TACTTCAGCGATACAGCGGCTGCGAGAGATTATGACATCTCAGGCGGTGGTTGGGCTCCTGACTACCAAGACCCATCGAC
TTACCTCGAAAGTATCAGCCCAGTAAATGGTTCTGTCTTCTACTATCTTGGTATTGATGCAGGTTCAAACAACCCAGCCA
TTGCAACAGTTGGGTTGGATCAATACGCTAACATGTTGAAAGACGCCGATGCTGAATTGTTGGATCAAGGAAAACGCTAT
GAAAAATATGCAGCAGCGCAAGCATGGTTGACAGATAGCTCGATTACGCTTCCAACTGTTTCAAATGGTGGTTCTCCAAT
GCTTCAACGGACCGTACCATACAGCCGTGCTGCTTCATGGGTTGGTACAAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCTAAAGATGTTGTCACAACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.636

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.485

100

0.539
  amiA Streptococcus salivarius strain HSISS4

52.504

100

0.528