Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV49_RS05950 Genome accession   NZ_CP133988
Coordinates   1262387..1264372 (+) Length   661 a.a.
NCBI ID   WP_037607943.1    Uniprot ID   A0AAX4AUY4
Organism   Streptococcus parasanguinis strain B-1756     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257387..1269372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS05915 (RDV49_05915) - 1258327..1258560 (+) 234 WP_003007814.1 Imm74 family immunity protein -
  RDV49_RS05920 (RDV49_05920) - 1258863..1259210 (+) 348 WP_003007812.1 barstar family protein -
  RDV49_RS05925 (RDV49_05925) - 1259364..1259987 (+) 624 WP_050783537.1 hypothetical protein -
  RDV49_RS05930 (RDV49_05930) - 1260044..1260349 (+) 306 WP_003007809.1 hypothetical protein -
  RDV49_RS05935 (RDV49_05935) - 1260353..1260520 (+) 168 WP_196218545.1 hypothetical protein -
  RDV49_RS05940 (RDV49_05940) - 1260716..1261162 (+) 447 WP_003007805.1 NADAR family protein -
  RDV49_RS05945 (RDV49_05945) - 1261226..1262263 (+) 1038 WP_003007803.1 M42 family metallopeptidase -
  RDV49_RS05950 (RDV49_05950) amiA3 1262387..1264372 (+) 1986 WP_037607943.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS05955 (RDV49_05955) - 1264492..1267521 (+) 3030 WP_037607941.1 CocE/NonD family hydrolase -
  RDV49_RS05960 (RDV49_05960) trxA 1267619..1267933 (+) 315 WP_003007797.1 thioredoxin -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73539.28 Da        Isoelectric Point: 5.5506

>NTDB_id=878168 RDV49_RS05950 WP_037607943.1 1262387..1264372(+) (amiA3) [Streptococcus parasanguinis strain B-1756]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDKYGNLV
PSLAKDWTVSKDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGIKAVDDHTLQVTLNQAEPFWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQANGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENIVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVMPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=878168 RDV49_RS05950 WP_037607943.1 1262387..1264372(+) (amiA3) [Streptococcus parasanguinis strain B-1756]
ATGAAAAAAAGAAATGTCATCGCACTTGCGGGAGTTGCTCTCCTTTCAGCAGGTATCCTAGCGGCTTGTTCTGGTGGTTC
TAAATCATCTAGTTCAAGCAACGGCCAAAAATTCTCATATGTCTATGAGACGGAGCCTGAAAACTTGAACTATATCACAT
CTGGTAAAGCAGCAACCCATGAAATCACTGGGAACTTGATTGATGGTTTGTTTGAAAATGACAAGTACGGAAATTTGGTT
CCTTCTCTTGCTAAAGATTGGACAGTTTCTAAAGATGGTTTGACTTATACCTATAAACTTCGTGATGATGCCAAATGGTA
TGATTCAGAAGGGGAAGAGTACGCAGATGTAACAGCTAAAGATTTCGTAACAGGAATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATTATCCAAGATTCTATCAAAGGTTTGAACGACTACGTCAGCGGAAAAAATAAAGATTTCTCTGCT
GTAGGAATTAAAGCAGTTGATGATCATACCCTTCAAGTTACTTTGAACCAGGCAGAGCCTTTCTGGAATTCTAAATTGAC
TCTTGGAATTACCTTCCCAGTCAACGAGAAATTCGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGACACCAGCT
CTCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCCAAATC
ATTCGGTGAAAATGCTCTTAGCTTGGCCAAACTCTTCCCAACTGGATCTGGTTACTCAGAGCAAGCCAAAGAATTCAAAG
ACGAAATCACCTACACTCCTCAAGACGCCGCTTCTTATGTTATTGGTACCAACATCGACCGTCAATCTTACAAACACACT
GCTAAGAAGACCGATGAGGAAAAACAATCTACTAAGAAAGCCCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTAATGGCAAGACCTTTGGTGAAATGGTGAAAACTCAATTGGACACCTACGGAGATGAGTGGAAA
TCTACTAAACTAGATGATGGTCAAAACGGTCTCTTCGATGCTAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTGGACCAAACCACACCATCAAGAGTTCAACGGG
TACAATCCTTCAAACAATCAGTTGAAGAAGCACTTGGTAAAGAAAATATCGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCACCAAATGCGGCTGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTATGAAAAATATGCGGCTGCACAAGCTTGGTTGACTGATAGCGCCCTTGTTATGCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGATAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAACAAAAAAGCACAAGAAGATCTTAAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.949

100

0.57
  amiA Streptococcus salivarius strain HSISS4

56.798

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.495

100

0.566