Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDV49_RS05100 Genome accession   NZ_CP133988
Coordinates   1080317..1081126 (+) Length   269 a.a.
NCBI ID   WP_023918725.1    Uniprot ID   V8BDC2
Organism   Streptococcus parasanguinis strain B-1756     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075317..1086126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS05085 (RDV49_05085) - 1076326..1077375 (-) 1050 WP_003008156.1 DUF389 domain-containing protein -
  RDV49_RS05090 (RDV49_05090) micA 1078263..1078964 (+) 702 WP_003008151.1 response regulator YycF Regulator
  RDV49_RS05095 (RDV49_05095) micB 1078957..1080309 (+) 1353 WP_003008150.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDV49_RS05100 (RDV49_05100) vicX 1080317..1081126 (+) 810 WP_023918725.1 MBL fold metallo-hydrolase Regulator
  RDV49_RS05105 (RDV49_05105) - 1081269..1081814 (+) 546 WP_003008145.1 hypothetical protein -
  RDV49_RS05110 (RDV49_05110) - 1081848..1082234 (+) 387 WP_003008142.1 YbaN family protein -
  RDV49_RS05115 (RDV49_05115) rnc 1082334..1083035 (+) 702 WP_037607998.1 ribonuclease III -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29756.72 Da        Isoelectric Point: 5.9511

>NTDB_id=878166 RDV49_RS05100 WP_023918725.1 1080317..1081126(+) (vicX) [Streptococcus parasanguinis strain B-1756]
MTEEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=878166 RDV49_RS05100 WP_023918725.1 1080317..1081126(+) (vicX) [Streptococcus parasanguinis strain B-1756]
ATGACAGAAGAGGGATTTAAGTATAGTATTTTAGCTTCAGGTTCTAGTGGGAATTCTTTCTACCTTGAGACGCCAAAGAA
AAAACTGCTTATTGATGCAGGCCTATCAGGGAAAAAGATTACGGGACTATTGGCTGAAATTGATCGCAAACCAGAAGACT
TAGATGCCATTTTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGCGGAAATATGGCATGGAT
CTATATGCTAATGAAGCAACTTGGAAGGCTATGGAAGGCACCAAGTATCTAGGCAAGGTTGATGATGCTCAAAAGCACAT
CTTTGAAATGGGGAAGACCAAGACATTTGGCGATATCGATATCGAAAGTTTTGGGGTCAGTCACGATGCTGCAGCCCCTC
AATTCTATCGCTTTATGAAGGATGGCAAGAGCTTCGTCATGCTGACGGATACGGGCTATGTGAGTGATCGCTTGGCAGGA
ATCGTCGCAGATGCTGATGGCTATCTGATTGAGTCCAACCATGATGTAGAGATCCTTCGAGCAGGTTCGTATGCTTGGCG
CTTGAAGCAGCGGATCTTGTCAGACCTAGGCCACCTTTCTAACGAAGACGGTGCAGATGCCATGATCCGAACCTTGGGAA
ATCGTACCAAGAAGATTTATCTGGGACATTTGTCAAAAGAGAACAATATCAAAGAATTGGCTCATATGACCATGGAGAAT
CAACTGGCTCGAGCAGATCTAGCTGTCGGCCATGATTTTGAGGTGTTAGATACCTCGCCAGATACCGCGACCCCTTTGAC
GAAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781