Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RDV49_RS02440 Genome accession   NZ_CP133988
Coordinates   472739..473500 (-) Length   253 a.a.
NCBI ID   WP_003009236.1    Uniprot ID   A0AAX4AYK6
Organism   Streptococcus parasanguinis strain B-1756     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 467739..478500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS02415 (RDV49_02415) ychF 467787..468902 (-) 1116 WP_003009244.1 redox-regulated ATPase YchF -
  RDV49_RS02420 (RDV49_02420) - 469080..469577 (+) 498 WP_037608180.1 DUF1307 domain-containing protein -
  RDV49_RS02425 (RDV49_02425) - 469613..469804 (-) 192 WP_003002008.1 DUF951 domain-containing protein -
  RDV49_RS02430 (RDV49_02430) dnaN 469817..470953 (-) 1137 WP_021154169.1 DNA polymerase III subunit beta -
  RDV49_RS02435 (RDV49_02435) dnaA 471113..472471 (-) 1359 WP_003009237.1 chromosomal replication initiator protein DnaA -
  RDV49_RS02440 (RDV49_02440) spo0J 472739..473500 (-) 762 WP_003009236.1 ParB/RepB/Spo0J family partition protein Regulator
  RDV49_RS02445 (RDV49_02445) htrA 473572..474753 (-) 1182 WP_003009234.1 S1C family serine protease Regulator
  RDV49_RS02450 (RDV49_02450) rlmH 474958..475437 (+) 480 WP_003009233.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RDV49_RS02460 (RDV49_02460) - 475898..477238 (+) 1341 WP_003009231.1 GHKL domain-containing protein -
  RDV49_RS02465 (RDV49_02465) comE/comE2 477235..477993 (+) 759 WP_003009229.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29331.88 Da        Isoelectric Point: 9.7134

>NTDB_id=878153 RDV49_RS02440 WP_003009236.1 472739..473500(-) (spo0J) [Streptococcus parasanguinis strain B-1756]
MEKLEKIAVKDIRTNPFQPRKVFDQEKLEELAQSIKENGLIQPIIVRKSPIIGFELLAGERRFRASKIAGLELVPAIIKE
LTDQEMMRQAIIENLQREDLNPIEEAISYQKLVDHGYKHDQIAQFMGKSRPYISNMLRLLHLAPSVQEAVIQNDISSAHA
RVLVPLDEEEQRFWLERIKQDHLNVRTLESKISSKRKQKKQKAKESFLLEEEQRLKKILGTDVTIHSSSQNKGTIQISFS
SLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=878153 RDV49_RS02440 WP_003009236.1 472739..473500(-) (spo0J) [Streptococcus parasanguinis strain B-1756]
ATGGAAAAATTAGAAAAAATAGCGGTAAAGGACATTCGAACCAATCCTTTCCAACCAAGAAAAGTATTTGATCAAGAAAA
ATTAGAAGAACTGGCTCAGTCAATCAAAGAAAATGGCTTAATTCAACCCATTATTGTCAGAAAATCTCCAATAATTGGTT
TTGAATTGCTTGCAGGTGAAAGACGTTTTAGAGCTTCAAAAATTGCTGGATTAGAGCTTGTTCCTGCGATTATTAAAGAG
TTAACAGATCAAGAAATGATGCGACAAGCCATTATTGAAAATCTTCAACGAGAAGATCTCAATCCAATTGAAGAAGCTAT
CTCCTACCAAAAGCTTGTTGATCATGGATATAAGCACGACCAAATCGCTCAATTTATGGGGAAATCTAGACCCTATATCA
GCAATATGCTTCGCTTGTTACATCTAGCTCCCTCTGTTCAAGAAGCAGTCATTCAAAATGATATTTCTTCGGCTCACGCG
CGTGTTCTTGTTCCTCTTGATGAAGAAGAGCAGCGCTTTTGGTTGGAGCGAATCAAACAGGATCATTTAAATGTTCGAAC
ATTAGAAAGCAAGATCAGTTCAAAAAGAAAACAGAAAAAACAAAAAGCAAAAGAGAGCTTCCTACTAGAAGAGGAACAAC
GATTGAAAAAAATATTAGGAACAGATGTGACGATACACTCCTCTTCTCAAAATAAAGGAACTATCCAAATTTCTTTTTCC
AGTCTTGATGAATACCAACGAATTATCAACAGCCTCAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.012

100

0.49