Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV49_RS00910 Genome accession   NZ_CP133988
Coordinates   200631..202607 (-) Length   658 a.a.
NCBI ID   WP_003009924.1    Uniprot ID   A0AAX4AXW1
Organism   Streptococcus parasanguinis strain B-1756     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 195631..207607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00890 (RDV49_00890) - 195652..196380 (-) 729 WP_003009931.1 ABC transporter ATP-binding protein -
  RDV49_RS00895 (RDV49_00895) - 196373..197227 (-) 855 WP_037608466.1 SDR family oxidoreductase -
  RDV49_RS00900 (RDV49_00900) - 197245..197694 (-) 450 WP_003009927.1 MarR family winged helix-turn-helix transcriptional regulator -
  RDV49_RS00905 (RDV49_00905) leuS 198006..200507 (-) 2502 WP_003009925.1 leucine--tRNA ligase -
  RDV49_RS00910 (RDV49_00910) amiA3 200631..202607 (-) 1977 WP_003009924.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS00915 (RDV49_00915) - 202772..204094 (+) 1323 WP_003009922.1 DUF1958 domain-containing protein -
  RDV49_RS00920 (RDV49_00920) - 204410..205501 (-) 1092 WP_003009920.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72865.88 Da        Isoelectric Point: 5.2042

>NTDB_id=878139 RDV49_RS00910 WP_003009924.1 200631..202607(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
MNKGKVLLATSALLLSAGVLAACSGGKSGSSGDQTFSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTAEGEEYGEVKAKDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTSDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNEEFLKSKGDDYGQGTSPSSILYCGPYLIKSITSKSSAILEKNPTYWD
ADNVKISKVKLTYYDGQDSESLIRGFDNGDYTVARVFPNGSNYKSVEKKHKDDIVYTDQGSSTYNLSFNIDRQAYEITKK
TTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQTNGEAGANKVIRNTFTPPNFVQIDGKQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSVESTLGAENIVIDLNMVSEDDL
QRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYIDITSGKSGENANSYFGFDAGTDNAAAKAAGFDEYDQLIEDAHNETK
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPVVRKTVPYSAAFAWTGHKGQTFNYKYLEVQDKVVSAKDYDKARDQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=878139 RDV49_RS00910 WP_003009924.1 200631..202607(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTGGAAGTTCCGGCGATCAGACTTTTAGCTATGTCTATACCCAGGATCCGGATACACTGGATTACTCGATTTCCAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTGATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGCAAAGGGGTCAAATGGATGACTGC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCCAAAGACTTTGTCACAGGTCTCAAACACGCGGCAGATAAGAAATCACAAG
CGATTTACTTGGTCCAAAAATCTGTCAAAGGTTTGGATGATTATGTTTCAGGGAAGACATCTGATTTCTCAACTGTTGGT
GTGAAAGCTATTGACGATTACACCGTTCAATATACCTTGAGCCAACCAGAAAGTTTCTGGAATTCCAAGACTACGATGGG
GATCTTGATGCCGGTCAATGAAGAATTCCTGAAATCTAAAGGAGATGACTATGGTCAAGGAACTTCTCCATCTAGTATCC
TCTACTGCGGTCCTTATTTGATCAAATCTATCACTTCTAAATCTTCTGCGATATTGGAAAAGAACCCAACATACTGGGAT
GCGGATAATGTTAAGATCAGTAAAGTCAAGCTGACCTATTATGATGGACAAGACTCAGAATCCTTGATTCGTGGGTTTGA
TAACGGCGACTATACAGTTGCCCGTGTTTTCCCAAATGGTTCTAACTATAAGAGTGTAGAGAAGAAGCATAAGGACGACA
TTGTCTATACTGACCAAGGTTCCTCTACCTACAATCTTTCCTTCAACATTGACCGTCAGGCTTATGAAATCACAAAGAAG
ACCACGGATGCTCAAAAGACTTCAACTAAGAAAGCCATCTTAAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTTCAA
CCGCAAGGCTTATGTAGCGCAAACTAACGGGGAAGCGGGTGCCAATAAGGTGATCCGTAATACCTTTACGCCACCAAACT
TTGTCCAAATCGATGGCAAACAATTTGGTGATGCAGTAGAAAAAGACTTAGAAGCTTATGGGGATGAATGGAAAGGGGTC
TCTGTCGCAGATGGAAAAGACACCCTCTACAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGATTTGCA
GGCTCAAGGAGTTGAATTCCCAATTCATTTGGACCTTCCAACTTCTTCAACTTATACAGAAGGGATCAAACAAGCTCAAT
CCTTTAAACAGTCAGTTGAATCTACACTAGGAGCAGAAAATATTGTCATCGACCTGAATATGGTTTCTGAGGATGATCTG
CAACGGGTGACTTACTTTGCTGAAAATGCTTCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGACTA
TACGGACCCATCTTCTTACATCGATATCACTAGTGGTAAATCCGGCGAAAACGCCAATTCTTACTTTGGATTCGATGCTG
GTACGGATAATGCAGCCGCAAAAGCAGCTGGTTTTGATGAATATGATCAATTGATCGAAGATGCGCACAATGAAACCAAA
GATGTGAACAAGCGTTACGAAAAATACGCTGCCGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATCCATTC
AGATGGAGCTTCTCCAGTCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAAACCT
TCAACTATAAATATTTGGAAGTTCAAGACAAGGTTGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.515

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

56.212

100

0.564
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559