Detailed information NTG0878082

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RI210_RS18695
• Genome accession: NZ_CP133985
• Coordinates: 4149893..4151233 (-)
• Length: 446 a.a.
• NCBI ID: WP_310750101.1
• Uniprot ID: -
• Organism: Methylomonas koyamae strain MY1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4144893..4156233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI210_RS18680 (RI210_18680)	-	4146354..4147205 (-)	852	WP_310750093.1	HDOD domain-containing protein	-
RI210_RS18685 (RI210_18685)	-	4147386..4149221 (+)	1836	WP_310750095.1	EAL domain-containing protein	-
RI210_RS18690 (RI210_18690)	-	4149372..4149848 (+)	477	WP_310750098.1	hypothetical protein	-
RI210_RS18695 (RI210_18695)	pilR	4149893..4151233 (-)	1341	WP_310750101.1	sigma-54 dependent transcriptional regulator	Regulator
RI210_RS18700 (RI210_18700)	-	4151230..4152771 (-)	1542	WP_310750104.1	ATP-binding protein	-
RI210_RS18705 (RI210_18705)	sucC	4152951..4154120 (+)	1170	WP_310750107.1	ADP-forming succinate--CoA ligase subunit beta	-
RI210_RS18710 (RI210_18710)	sucD	4154120..4154992 (+)	873	WP_310750111.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49519.11 Da
• Isoelectric Point: 6.0820

>NTDB_id=878082 RI210_RS18695 WP_310750101.1 4149893..4151233(-) (pilR) [Methylomonas koyamae strain MY1]
MNMPVTLVVDDEPDIRELLEITLNRMQIQTLSAATLAEAKHCLANQSFDLCLTDMRLPDGDGLELVDYIQAQGLTLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLAVLRQLVSHALQISLNRVAEKERRTRDLLLGESAPMRNIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRSEKAFIAINCGAIPHELMESEFFGHKKGSFTGAVSDKQGLFQAADGGTLFLDEVAD
LPLALQVKLLRAIQEKKIRPIGEQREIPVDVRLLSATHRDLAKMVQEGSFRQDLYYRINVIELNLPPLRARAADIPQLTE
HLLQGLARANGIAIPRLSDAALNALKQYYFPGNVRELENILERALVLHEGGVIEVDDLNLPTGLDLAAAEDFDAEKMSLE
SYLEDIEKKALSSALEENRWNKTATAKYLGMSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=878082 RI210_RS18695 WP_310750101.1 4149893..4151233(-) (pilR) [Methylomonas koyamae strain MY1]
ATGAATATGCCTGTTACGTTAGTGGTCGACGACGAGCCCGATATTCGGGAGTTGTTGGAAATCACGTTAAACCGGATGCA
GATCCAGACCCTTAGCGCGGCTACGCTCGCCGAAGCTAAGCACTGTCTGGCTAACCAATCCTTCGATTTATGTTTGACCG
ACATGCGCTTGCCGGACGGAGACGGCTTGGAACTGGTCGATTACATCCAGGCCCAAGGTTTGACGCTGCCGGTGGCGGTA
ATCACCGCCCACGGCAGCATGGATATCGCGATCAAGGCCATGAAAAAAGGCGCTTTCGATTTTCTGTCCAAGCCGGTCGA
TCTGGCGGTGTTAAGGCAATTGGTCAGCCATGCCTTGCAGATCTCGCTGAACCGGGTGGCCGAAAAGGAACGCCGCACCC
GCGATTTGTTGCTCGGGGAATCGGCGCCGATGCGCAATATCCGCTCCAAGATCGATAAAGTGGCGCGCAACCAGGCGCCG
GTTTACATCAGCGGCGAGTCGGGTTCCGGCAAGGAATTGGTGGCGCGGCTGATTCACCAGCAAAGCCCGCGCAGCGAAAA
GGCTTTTATCGCCATCAATTGCGGCGCGATTCCGCACGAATTGATGGAAAGCGAATTTTTCGGCCACAAAAAAGGCAGCT
TCACCGGGGCGGTCAGCGATAAGCAAGGTTTGTTTCAAGCCGCGGACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGAT
TTGCCGTTGGCTTTGCAAGTCAAATTGCTGCGGGCGATACAGGAAAAGAAAATCCGTCCGATCGGCGAGCAGCGCGAAAT
TCCGGTGGACGTGCGTTTGCTGAGCGCGACCCACAGGGATTTGGCAAAAATGGTTCAGGAAGGCAGTTTTCGGCAGGACT
TGTATTACCGGATCAACGTCATCGAACTGAATCTGCCGCCATTACGGGCGCGAGCCGCCGATATTCCGCAATTGACCGAA
CATCTGCTGCAAGGTTTGGCGCGGGCCAACGGTATTGCTATCCCGCGCCTGTCGGATGCGGCGTTGAATGCGCTGAAACA
GTATTATTTTCCGGGCAACGTCCGCGAGTTGGAAAATATTTTGGAGCGGGCTTTGGTGCTGCACGAGGGCGGCGTGATCG
AGGTCGACGATTTGAATTTGCCGACGGGTTTGGACTTGGCCGCGGCGGAAGATTTCGATGCCGAAAAAATGTCGCTGGAA
AGTTATCTGGAAGATATCGAGAAAAAAGCGCTGAGTTCGGCTTTGGAGGAAAACCGCTGGAATAAAACCGCGACGGCTAA
ATATTTGGGCATGAGTTTCCGCTCGTTGCGTTACCGGTTGAAGAAACTCGGTCTGGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.111	100	0.637
pilR	Acinetobacter baumannii strain A118	50.644	100	0.529
luxO	Vibrio cholerae strain A1552	39.414	99.552	0.392