Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   RIM63_RS07160 Genome accession   NZ_CP133952
Coordinates   1493457..1494458 (-) Length   333 a.a.
NCBI ID   WP_317583540.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1488457..1499458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS07145 (RIM63_07145) - 1489280..1490614 (-) 1335 WP_301899400.1 glycosyltransferase family 4 protein -
  RIM63_RS07150 (RIM63_07150) - 1490616..1491614 (-) 999 WP_043026199.1 glycosyltransferase family 4 protein -
  RIM63_RS07155 (RIM63_07155) - 1491912..1493387 (-) 1476 WP_317583538.1 alpha-amylase -
  RIM63_RS07160 (RIM63_07160) ccpA 1493457..1494458 (-) 1002 WP_317583540.1 catabolite control protein A Regulator
  RIM63_RS07165 (RIM63_07165) - 1494632..1495717 (+) 1086 WP_038674132.1 Xaa-Pro peptidase family protein -
  RIM63_RS07170 (RIM63_07170) - 1495899..1497482 (-) 1584 WP_115251175.1 ABC transporter ATP-binding protein -
  RIM63_RS07175 (RIM63_07175) - 1497484..1497618 (-) 135 WP_267872272.1 hypothetical protein -
  RIM63_RS07180 (RIM63_07180) - 1497698..1498549 (+) 852 WP_301899408.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36573.71 Da        Isoelectric Point: 6.0694

>NTDB_id=877773 RIM63_RS07160 WP_317583540.1 1493457..1494458(-) (ccpA) [Streptococcus equi subsp. zooepidemicus strain HT321]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTDKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYKAAVADVVDILAKGHQSIAFVSGPLIDDINGKVRLAGYKDGLKKNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=877773 RIM63_RS07160 WP_317583540.1 1493457..1494458(-) (ccpA) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAATACAGATGATACAATCACGATTTATGATGTTGCTCGCGAAGCGGGAGTTTCAATGGCGACAGTTAGTCGAGTTGT
AAATGGTAACAAAAATGTAAAGGAAAATACCCGCAAAAAGGTCTTAGAGGTTATTGATCGTCTCGATTATCGTCCAAATG
CTGTTGCTCGTGGTCTTGCAAGTAAAAAGACAACAACGGTTGGTGTTGTGATTCCTAATATCGCAAATAGCTATTTTTCT
ATTCTGGCAAAGGGAATTGATGATATTGCTGCTATGTACAAGTACAATATTGTTCTTGCTTCAAGCGATGAGGACGACGA
TAAAGAGGTCAATGTTGTGAATACCCTCTTTGCAAAGCAGGTTGATGGCATTATTTTCATGGGACATCACTTGACTGACA
AGATTCGGGCAGAGTTTTCTCGTTCGCGTACGCCAATCGTTCTGGCAGGAACGGTTGATCTGGATCATCAGCTGCCAAGT
GTTAACATTGATTATAAGGCGGCTGTTGCTGATGTTGTGGATATTTTAGCTAAAGGCCACCAAAGCATTGCCTTTGTTTC
AGGGCCGCTCATTGATGATATCAACGGAAAGGTGCGTTTAGCTGGCTACAAGGACGGACTCAAGAAGAACAAGCTTGACT
TTAAAGAGGGTCTGGTGTTTGAGGCCAACTATTCTTATAAGGAAGGCTTTGAGCTGGCTCAGCGTGTGATCAATTCCGGA
GCGACAGCTGCCTATGTTGCAGAGGACGAGCTGGCAGCAGGCCTTTTGAATGGTCTTTTTGAAGCTGGCAAGCGTGTTCC
AGAGGACTTTGAGATTATCACAAGCAATGATTCTCCAGTGGTTCAGTACACACGTCCAAATTTGAGCTCTATCAGCCAGC
CAGTCTATGACTTGGGTGCTGTTAGCATGCGTATGCTCACTAAGATCATGAATAAGGAAGAATTAGAAGAAAAAGAAATT
TTATTGAACCATGGCATTAAAAAGCGTGGGACAACAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.078

100

0.781

  ccpA Streptococcus pneumoniae D39

76.877

100

0.769

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.287

99.399

0.55