Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RIM64_RS08875 Genome accession   NZ_CP133951
Coordinates   1857877..1858365 (-) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1852877..1863365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS08860 (RIM64_08860) - 1855362..1856306 (+) 945 WP_014622324.1 magnesium transporter CorA family protein -
  RIM64_RS08865 (RIM64_08865) - 1856564..1857214 (+) 651 WP_021320374.1 DUF1129 domain-containing protein -
  RIM64_RS08870 (RIM64_08870) rpsR 1857479..1857718 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  RIM64_RS08875 (RIM64_08875) ssbA 1857877..1858365 (-) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  RIM64_RS08880 (RIM64_08880) rpsF 1858384..1858674 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  RIM64_RS08885 (RIM64_08885) - 1859736..1859961 (-) 226 Protein_1697 HicB family protein -
  RIM64_RS08890 (RIM64_08890) mutY 1860050..1861198 (+) 1149 WP_043040083.1 A/G-specific adenine glycosylase -
  RIM64_RS08895 (RIM64_08895) - 1862060..1862344 (+) 285 WP_041785270.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=877727 RIM64_RS08875 WP_038674547.1 1857877..1858365(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=877727 RIM64_RS08875 WP_038674547.1 1857877..1858365(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377