Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RIM64_RS01645 Genome accession   NZ_CP133951
Coordinates   332856..334832 (+) Length   658 a.a.
NCBI ID   WP_043026548.1    Uniprot ID   A0A7Z9D3Z8
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 327856..339832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS01630 (RIM64_01630) - 328486..329667 (-) 1182 WP_165619387.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RIM64_RS01635 (RIM64_01635) pbp3 329751..330986 (-) 1236 WP_165619531.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RIM64_RS01640 (RIM64_01640) pbp3 331310..332548 (-) 1239 WP_165619530.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RIM64_RS01645 (RIM64_01645) amiA3 332856..334832 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  RIM64_RS01650 (RIM64_01650) amiC 334896..336395 (+) 1500 WP_012516281.1 ABC transporter permease Regulator
  RIM64_RS01655 (RIM64_01655) amiD 336395..337321 (+) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM64_RS01660 (RIM64_01660) amiE 337330..338400 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM64_RS01665 (RIM64_01665) amiF 338393..339316 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72891.26 Da        Isoelectric Point: 5.0136

>NTDB_id=877688 RIM64_RS01645 WP_043026548.1 332856..334832(+) (amiA3) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKALRSTLVPPTFVQIGDKDFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKIVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEEYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=877688 RIM64_RS01645 WP_043026548.1 332856..334832(+) (amiA3) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCGGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGATGGCTTGACCTATACCTACACGCTTCGTGATGGGATCAAATGGTACACATC
TGATGGTGAAGAATATGCAGATGTGACAGCTGAGGATTTTGTGGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACGGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATTACAGCTTTGACAAGTAAATCCTCTATCGAGCTTGTCAAAAACGAAAACTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGAGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TTACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAAGCGCTTCGTAGCACACTTGTACCACCGACAT
TTGTGCAAATTGGCGACAAAGACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTG
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGCGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGACTA
TGTCGACCCATCATCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGTAAGATTACTGAT
GATCTCAATGCCCGCTATACGCTCTACGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCAACTATCTC
ACTTGGTGGAACACCACGTGTGACTAAAATCGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAGAATATAACAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z9D3Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.364

100

0.565
  amiA3 Streptococcus thermophilus LMD-9

56.061

100

0.562
  amiA Streptococcus salivarius strain HSISS4

55.994

100

0.561