Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RIM62_RS01650 Genome accession   NZ_CP133950
Coordinates   334796..336295 (+) Length   499 a.a.
NCBI ID   WP_012516281.1    Uniprot ID   A0AAW3GJV8
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 329796..341295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS01640 (RIM62_01640) pbp3 331210..332448 (-) 1239 WP_165619530.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RIM62_RS01645 (RIM62_01645) amiA3 332756..334732 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  RIM62_RS01650 (RIM62_01650) amiC 334796..336295 (+) 1500 WP_012516281.1 ABC transporter permease Regulator
  RIM62_RS01655 (RIM62_01655) amiD 336295..337221 (+) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM62_RS01660 (RIM62_01660) amiE 337230..338300 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM62_RS01665 (RIM62_01665) amiF 338293..339216 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  RIM62_RS01670 (RIM62_01670) - 339616..340779 (-) 1164 WP_165619529.1 IS30-like element ISSeq6 family transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55636.07 Da        Isoelectric Point: 10.1102

>NTDB_id=877627 RIM62_RS01650 WP_012516281.1 334796..336295(+) (amiC) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPSVTTAPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIVTFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=877627 RIM62_RS01650 WP_012516281.1 334796..336295(+) (amiC) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGAAAAAATACATATTTGAACGCATATTGAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACTATTGT
CTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAAATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTTCTGTAACAACTGCACCAACTAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCCGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCAGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTTCCATTTATCCATCAAAATATCGTAACCTTTGATTTGGGAGTGTCCTATCCAACCTATGCCAATATTCCAGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAAGAGGTCACCTTCCCAACAGGCAAAACAAAGCTGTCTTCA
ATTGATATTTACTCTCGAACCTATAAAACACCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACCAATACACAAAATAACTATGCAGAGCCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGT
TGTCCTATCTTTTTGGTTTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCCAGCATTGCACTTATCTATATTGTTCGATTTGTCGGTTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTGCTAGGAGCAGGAGATGTTAGGTCTTATGTGCTGCCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGACGCTATATTGTGGACTTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTTGAGATTTCAAAAAATCATCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAAGCCAT
TGTCGGAACAATTGCCGGTGCAACCTTGACAGAGACCGTCTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACAATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.525

100

0.625
  amiC Streptococcus thermophilus LMG 18311

62.525

100

0.625
  amiC Streptococcus thermophilus LMD-9

62.325

100

0.623