Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RHS39_RS14585 Genome accession   NZ_CP133900
Coordinates   3129556..3130134 (-) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain TW01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3124556..3135134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS14560 (RHS39_14560) aroB 3124846..3125946 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  RHS39_RS14565 (RHS39_14565) aroK 3125978..3126496 (-) 519 WP_005381319.1 shikimate kinase AroK -
  RHS39_RS14570 (RHS39_14570) pilQ 3126685..3128433 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  RHS39_RS14575 (RHS39_14575) pilP 3128465..3128980 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  RHS39_RS14580 (RHS39_14580) pilO 3128970..3129563 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  RHS39_RS14585 (RHS39_14585) pilN 3129556..3130134 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  RHS39_RS14590 (RHS39_14590) pilM 3130118..3131134 (-) 1017 WP_017449463.1 type IV pilus biogenesis protein PilM Machinery gene
  RHS39_RS14595 (RHS39_14595) - 3131277..3133847 (+) 2571 WP_005480476.1 penicillin-binding protein 1A -
  RHS39_RS14600 (RHS39_14600) oxyR 3133903..3134811 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=877445 RHS39_RS14585 WP_015297396.1 3129556..3130134(-) (pilN) [Vibrio parahaemolyticus strain TW01]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=877445 RHS39_RS14585 WP_015297396.1 3129556..3130134(-) (pilN) [Vibrio parahaemolyticus strain TW01]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594