Detailed information NTG0877432

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHS39_RS13230
• Genome accession: NZ_CP133900
• Coordinates: 2865693..2866562 (+)
• Length: 289 a.a.
• NCBI ID: WP_025622886.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TW01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2860693..2871562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS13210 (RHS39_13210)	nadC	2861073..2861960 (+)	888	WP_025547616.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RHS39_RS13215 (RHS39_13215)	pilA	2862224..2862688 (+)	465	WP_025789070.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
RHS39_RS13220 (RHS39_13220)	pilB	2862695..2864380 (+)	1686	WP_025789071.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHS39_RS13225 (RHS39_13225)	pilC	2864405..2865628 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
RHS39_RS13230 (RHS39_13230)	pilD	2865693..2866562 (+)	870	WP_025622886.1	A24 family peptidase	Machinery gene
RHS39_RS13235 (RHS39_13235)	coaE	2866563..2867177 (+)	615	WP_025789072.1	dephospho-CoA kinase	-
RHS39_RS13240 (RHS39_13240)	zapD	2867205..2867945 (+)	741	WP_005480890.1	cell division protein ZapD	-
RHS39_RS13245 (RHS39_13245)	yacG	2868014..2868208 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
RHS39_RS13250 (RHS39_13250)	rplS	2868560..2868913 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
RHS39_RS13255 (RHS39_13255)	trmD	2868955..2869698 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
RHS39_RS13260 (RHS39_13260)	rimM	2869726..2870274 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
RHS39_RS13265 (RHS39_13265)	rpsP	2870303..2870551 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1971

>NTDB_id=877432 RHS39_RS13230 WP_025622886.1 2865693..2866562(+) (pilD) [Vibrio parahaemolyticus strain TW01]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=877432 RHS39_RS13230 WP_025622886.1 2865693..2866562(+) (pilD) [Vibrio parahaemolyticus strain TW01]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGACTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45