Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM60_RS05955 Genome accession   NZ_CP133785
Coordinates   1449605..1451830 (-) Length   741 a.a.
NCBI ID   WP_322213939.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444605..1456830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM60_RS05920 (RHM60_05920) murB 1444989..1446008 (-) 1020 WP_209982770.1 UDP-N-acetylmuramate dehydrogenase -
  RHM60_RS05925 (RHM60_05925) - 1446005..1446469 (-) 465 WP_322213936.1 low molecular weight protein-tyrosine-phosphatase -
  RHM60_RS05930 (RHM60_05930) kdsB 1446469..1447233 (-) 765 WP_209982772.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM60_RS05935 (RHM60_05935) - 1447230..1447415 (-) 186 WP_003174668.1 Trm112 family protein -
  RHM60_RS05940 (RHM60_05940) lpxK 1447440..1448450 (-) 1011 WP_322213938.1 tetraacyldisaccharide 4'-kinase -
  RHM60_RS05945 (RHM60_05945) - 1448450..1448878 (-) 429 WP_209982774.1 ExbD/TolR family protein -
  RHM60_RS05950 (RHM60_05950) exbB 1448875..1449510 (-) 636 WP_209982775.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM60_RS05955 (RHM60_05955) comA 1449605..1451830 (-) 2226 WP_322213939.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM60_RS05960 (RHM60_05960) - 1451966..1452481 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -
  RHM60_RS05965 (RHM60_05965) - 1452617..1455370 (+) 2754 WP_209982780.1 response regulator -
  RHM60_RS05970 (RHM60_05970) - 1455452..1455892 (+) 441 WP_209982783.1 hypothetical protein -
  RHM60_RS05975 (RHM60_05975) - 1455889..1456290 (+) 402 WP_322213940.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80458.32 Da        Isoelectric Point: 10.5172

>NTDB_id=876797 RHM60_RS05955 WP_322213939.1 1449605..1451830(-) (comA) [Pseudomonas sp. MH9.3]
MKTGMFALALGLLTLRVLPALPATGWLLAMLVLALMLLPFRTFALAFFLFGLSWACISAQWALNDRLPSALDGQTRWLEG
RVVGLPQQTSTGVRFELADSRSRHTRLPRRIRVSWHGGPAVHSGERWRLAVTLKRPSGLLNFQGFDHEAWLLAQRIGATG
TVKDGERLTPARNAWRDTLRQRLMTVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWRLWQAWTRAQWLIAIGLFPLLLMLDLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLAVPLVGEGLLWLAGGALDLLFQGLALLAAHLPAWIPAEVPLGYWLVSLAGAVIVLLPSGVPFRLLGWPMLLLAV
FTPRELVPHGRVDVVQLDVGQGQAIILRTRHHSVLYDAGPRSRAADLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVARGLPVKRVVGGETDGLPEFLGTQPCISGERWQWDGVSFELWQWPGAVDGNPKSCVLQVQANGERLLLTGDIDRAAE
RALLDSPLALRTDWLQAPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVLERYRAVGSRVYDSAEEGAVRLQL
GAFEPATVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=876797 RHM60_RS05955 WP_322213939.1 1449605..1451830(-) (comA) [Pseudomonas sp. MH9.3]
ATGAAGACAGGGATGTTTGCATTGGCGCTGGGGTTGCTGACTCTGCGTGTTTTACCCGCATTGCCAGCGACGGGATGGCT
GCTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTCCTGTTTGGTTTGAGTT
GGGCGTGCATCAGTGCGCAGTGGGCGCTGAATGACCGATTGCCCTCCGCACTGGACGGCCAGACGCGTTGGCTGGAAGGG
CGGGTGGTCGGGTTACCGCAGCAGACATCCACTGGCGTGCGCTTCGAACTGGCCGACAGCCGGTCACGCCATACCCGCTT
GCCCAGGCGCATCCGGGTGTCCTGGCACGGCGGGCCGGCGGTGCACAGTGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGCCTGCTCAACTTTCAGGGGTTCGATCACGAAGCCTGGCTGTTGGCGCAGCGCATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGTCTGACGCCGGCCCGCAACGCCTGGCGCGATACGCTGCGCCAACGCCTGATGACGGTGGA
TGCCCAGGGCCGCGAAGCGGGGCTGGCCGCGCTGGTGCTGGGCGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACATTGGCCTGCTGGCGGGGTTGATCTACGGGCTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGCGGCCTGGCCTTTGTTGC
AGCGCTGGGTTACGGCTTGCTGGCAGGGTTCGGCGTGCCGGTGCAGCGGGCCTGCGTCATGGTGGGGCTGGTGCTGCTGT
GGCGGTTGCGTTTTCGCCACCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGGGTACTGGTGCTGGAACCGCTG
GCGAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCGGTTGCGGTGTTGATACTGGCCTTCGGCGGGCGCTTGGGCCC
GTGGCGCCTGTGGCAGGCCTGGACGCGTGCGCAGTGGTTGATCGCCATCGGTCTTTTTCCCCTGTTGTTGATGCTTGATT
TGCCGATCAGCCTGAGTGCTCCCCTTGCCAATCTGGTCGCTGTGCCCTGGATCAGCCTGGTGGTGTTGCCGCTGGCATTG
CTGGGGACTGCCCTGCTGGCGGTGCCGCTTGTGGGGGAGGGCCTGCTGTGGTTGGCGGGCGGCGCGCTGGACCTGTTGTT
CCAGGGCCTGGCGCTGCTGGCGGCGCACCTGCCGGCGTGGATACCGGCCGAAGTGCCCCTGGGGTATTGGCTGGTGAGTC
TGGCCGGCGCGGTGATCGTGCTGCTGCCGAGCGGTGTGCCTTTTCGGCTGTTGGGTTGGCCGATGCTGTTGCTGGCGGTG
TTTACGCCGCGTGAGCTGGTGCCCCATGGGCGGGTGGACGTAGTGCAGCTGGATGTCGGCCAGGGGCAGGCGATTATCCT
GCGCACCCGTCATCACAGTGTGCTCTACGATGCCGGCCCGCGTTCGCGGGCCGCAGACCTGGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAAAAGCTTGGCATCGCGTCGCTGGATTTGATGCTGATCAGCCACGCCGATGCCGATCATGCCGGCGGGGCG
GCCGCGGTGGCGCGCGGGCTGCCGGTCAAGCGTGTGGTGGGGGGTGAAACCGACGGCCTGCCCGAGTTTCTCGGCACTCA
ACCTTGTATCAGCGGCGAACGCTGGCAGTGGGACGGTGTGTCATTCGAGCTGTGGCAATGGCCCGGGGCCGTCGACGGTA
ACCCGAAATCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAACGGTTGCTGCTCACCGGCGATATCGATCGCGCTGCCGAG
CGCGCGTTGCTCGACTCGCCGCTGGCGCTGCGCACCGACTGGCTGCAAGCCCCTCACCATGGCAGCCGCAGTTCGTCGTC
GCGGCCCTTTGTGCAGCAGTTGGCGCCCACGTCGGTGCTGATCTCGCGGGGGCGCGGCAATGCATTCGGCCATCCTCACG
CCCAGGTGCTGGAGCGTTACCGCGCAGTGGGCAGCCGGGTGTATGACAGCGCCGAGGAGGGTGCGGTACGCCTGCAGTTG
GGGGCTTTCGAGCCCGCCACGGTTGCACGCGCGCAACGCCGCTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.031

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.264

100

0.364