Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM60_RS05950 Genome accession   NZ_CP133785
Coordinates   1448875..1449510 (-) Length   211 a.a.
NCBI ID   WP_209982775.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443875..1454510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM60_RS05915 (RHM60_05915) - 1444247..1444918 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  RHM60_RS05920 (RHM60_05920) murB 1444989..1446008 (-) 1020 WP_209982770.1 UDP-N-acetylmuramate dehydrogenase -
  RHM60_RS05925 (RHM60_05925) - 1446005..1446469 (-) 465 WP_322213936.1 low molecular weight protein-tyrosine-phosphatase -
  RHM60_RS05930 (RHM60_05930) kdsB 1446469..1447233 (-) 765 WP_209982772.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM60_RS05935 (RHM60_05935) - 1447230..1447415 (-) 186 WP_003174668.1 Trm112 family protein -
  RHM60_RS05940 (RHM60_05940) lpxK 1447440..1448450 (-) 1011 WP_322213938.1 tetraacyldisaccharide 4'-kinase -
  RHM60_RS05945 (RHM60_05945) - 1448450..1448878 (-) 429 WP_209982774.1 ExbD/TolR family protein -
  RHM60_RS05950 (RHM60_05950) exbB 1448875..1449510 (-) 636 WP_209982775.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM60_RS05955 (RHM60_05955) comA 1449605..1451830 (-) 2226 WP_322213939.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM60_RS05960 (RHM60_05960) - 1451966..1452481 (+) 516 WP_209982778.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22999.15 Da        Isoelectric Point: 6.4937

>NTDB_id=876796 RHM60_RS05950 WP_209982775.1 1448875..1449510(-) (exbB) [Pseudomonas sp. MH9.3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876796 RHM60_RS05950 WP_209982775.1 1448875..1449510(-) (exbB) [Pseudomonas sp. MH9.3]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCAGCGCTGGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAACAGAAGCTCAAGGAACTGCGCGCCGATTCACCCCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCTGCCCGCGTCATTCATGAGCTGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACCGCA
GCGGGCCTGATGGTGGGTATTCCATCGGTGTTCTTCCACCGTTTCCTGCAACGGCGTATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGATCTGGTTGAGGACAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858