Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM55_RS07895 Genome accession   NZ_CP133784
Coordinates   1692677..1694893 (-) Length   738 a.a.
NCBI ID   WP_322180867.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687677..1699893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS07860 (RHM55_07860) - 1687780..1688250 (-) 471 WP_322180853.1 (2Fe-2S)-binding protein -
  RHM55_RS07865 (RHM55_07865) murB 1688519..1689544 (-) 1026 WP_322180855.1 UDP-N-acetylmuramate dehydrogenase -
  RHM55_RS07870 (RHM55_07870) kdsB 1689544..1690308 (-) 765 WP_322180857.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM55_RS07875 (RHM55_07875) - 1690305..1690490 (-) 186 WP_058437370.1 Trm112 family protein -
  RHM55_RS07880 (RHM55_07880) lpxK 1690517..1691530 (-) 1014 WP_322180861.1 tetraacyldisaccharide 4'-kinase -
  RHM55_RS07885 (RHM55_07885) - 1691530..1691961 (-) 432 WP_322180863.1 biopolymer transporter ExbD -
  RHM55_RS07890 (RHM55_07890) exbB 1691958..1692593 (-) 636 WP_322180865.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM55_RS07895 (RHM55_07895) comA 1692677..1694893 (-) 2217 WP_322180867.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM55_RS07900 (RHM55_07900) - 1695031..1695546 (+) 516 WP_322180869.1 DUF2062 domain-containing protein -
  RHM55_RS07905 (RHM55_07905) - 1695626..1696417 (-) 792 WP_322180871.1 ABC transporter permease -
  RHM55_RS07910 (RHM55_07910) - 1696414..1697346 (-) 933 WP_322180873.1 ABC transporter ATP-binding protein -
  RHM55_RS07915 (RHM55_07915) - 1697480..1698103 (-) 624 WP_322180875.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80645.70 Da        Isoelectric Point: 10.3471

>NTDB_id=876772 RHM55_RS07895 WP_322180867.1 1692677..1694893(-) (comA) [Pseudomonas sp. MH9.2]
MRTGMVALALGLLAIRFMPALPPFWLLLLTPVLALMLLPFRSYPLAFFLFGFSWACVSAQWALDDRLLPRLDGQTLWVQG
KVVGLPQSSDGVVRFQLDGAQSRRARLPEHMRLAWYGGSGVRSGEHWRLAVKLKRPAGLINPDSFDYEAWLLAQRIGATG
TVADGQLLAPARSAWRDAVRQRLLAVDAQGRQGGLAALVLGDDSGLTPADWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARWGLWPRRLPWLPCACGLAFAAALGYGLLAGFEVPVRRACTMIGMVLLWRLRFRHLGVWWPLLLSLNAVLVVEPL
VSLQPGFWLSFAAVAILILVFSGRLGAWSWLQSWTRAQWLIAIGLLPVVLALNLPVSLSGPLANLLAVPWISVVVLPLAL
LGTVLLPVPGIGEGLLWLAGGLLGWLFQGLAWVAGWVPAWIGSAVPWWAWWLSMLGGVLLLLPKGVPLRLLGWPLLLLCV
FPPVKSVPYGQVEVMQLDVGQGLAIVLRTRQHTLLYDAGPRFGDFDIGQRVVLPSIRKTGVRQLDLMLISHAHADHAGGA
QAVYKSLPVARVLAGEVAKLPPLLQAQSCQNGEQWQWDGVHFSTWRWEHATESNEASCVLRVEANGERLLLTGDIEAGAE
RAVLGSGFDVRAHWLQAPHHGSRSSSSTAFLKAVAPERVLISRGRNNAFGHPHPQVMARYAALAVQPYDSAELGAIRLQL
GVFGEAQGERARRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=876772 RHM55_RS07895 WP_322180867.1 1692677..1694893(-) (comA) [Pseudomonas sp. MH9.2]
ATGCGCACAGGGATGGTGGCGCTCGCGCTGGGTCTTTTGGCTATTCGTTTCATGCCGGCATTGCCACCGTTTTGGCTGTT
GCTGTTGACGCCCGTCTTGGCGCTGATGCTGTTGCCGTTTCGAAGTTATCCGCTGGCGTTTTTTCTGTTCGGCTTCAGTT
GGGCGTGTGTGTCGGCGCAATGGGCGCTGGATGATCGCCTGCTGCCTCGACTCGACGGCCAAACGCTATGGGTGCAAGGC
AAGGTGGTCGGCTTGCCGCAGTCGAGTGACGGCGTGGTGCGCTTTCAACTCGACGGTGCGCAATCACGTCGTGCCCGGTT
GCCTGAGCATATGCGTCTGGCGTGGTACGGCGGCTCTGGTGTGCGCAGCGGCGAGCACTGGCGGCTGGCGGTCAAGCTCA
AACGTCCGGCGGGCCTGATTAATCCTGATTCATTCGACTACGAAGCCTGGTTGTTGGCGCAGCGCATTGGCGCGACCGGT
ACCGTGGCGGATGGGCAATTGCTCGCGCCTGCGCGTTCAGCCTGGCGCGATGCGGTGCGTCAGCGGTTGCTGGCAGTCGA
TGCACAAGGACGTCAAGGCGGGCTGGCGGCGCTGGTGCTGGGCGACGATTCAGGGCTGACGCCGGCTGATTGGCAAGTGC
TGCAGGACACCGGCACTGTGCATCTGCTGGTGATCTCGGGCCAGCACATCGGGTTACTGGCCGGGTTGATTTACGCGCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCGCGCCGTTTGCCGTGGTTGCCCTGTGCGTGTGGCCTGGCGTTTGCCGC
AGCGCTCGGTTACGGCTTGCTGGCTGGTTTTGAAGTGCCGGTGCGCCGAGCCTGCACGATGATCGGTATGGTCCTGCTCT
GGCGTCTGCGCTTCCGTCACCTGGGTGTGTGGTGGCCCTTGTTGTTGTCACTCAACGCGGTACTGGTCGTCGAACCGCTG
GTCAGTTTGCAACCCGGTTTTTGGTTGTCCTTTGCCGCCGTCGCGATCCTGATTCTGGTATTCAGTGGTCGGCTGGGCGC
CTGGAGCTGGCTGCAAAGCTGGACCCGTGCGCAATGGTTGATCGCCATCGGGTTGCTCCCGGTAGTGCTCGCGTTGAACC
TGCCGGTCAGTCTCAGCGGGCCATTGGCCAATTTGCTCGCGGTGCCATGGATCAGCGTCGTCGTGTTGCCGCTGGCGCTG
CTCGGCACTGTGTTATTGCCGGTGCCCGGTATTGGCGAGGGTTTGCTGTGGCTGGCTGGAGGTCTGCTGGGGTGGCTGTT
TCAGGGGTTGGCGTGGGTCGCTGGGTGGGTCCCGGCCTGGATCGGCAGTGCGGTGCCGTGGTGGGCGTGGTGGCTGAGCA
TGCTTGGCGGCGTCTTGTTGCTGCTGCCCAAGGGCGTGCCATTGCGTCTGTTGGGCTGGCCGCTGTTGCTGCTGTGCGTG
TTCCCGCCAGTGAAGAGCGTGCCCTATGGTCAGGTCGAGGTGATGCAGCTGGATGTGGGACAGGGCCTGGCGATTGTGTT
GCGGACGCGCCAGCACACGCTGTTGTATGACGCAGGCCCGCGCTTCGGTGATTTCGATATTGGCCAGCGCGTGGTGCTGC
CGTCGATACGCAAGACCGGCGTACGCCAGCTCGATTTGATGTTGATCAGTCATGCGCATGCCGACCATGCGGGTGGGGCG
CAGGCCGTCTATAAAAGCTTGCCTGTTGCCCGCGTACTGGCTGGCGAGGTAGCCAAGTTGCCGCCACTCTTGCAGGCTCA
GTCCTGTCAGAACGGTGAGCAATGGCAGTGGGATGGTGTGCATTTCTCGACCTGGCGCTGGGAACACGCGACAGAGAGTA
ACGAGGCTTCCTGCGTACTGCGGGTCGAGGCCAATGGTGAGCGTTTGTTGTTGACTGGCGATATTGAAGCCGGAGCCGAA
CGTGCCGTGCTCGGCAGCGGGTTCGATGTTCGCGCGCATTGGTTGCAGGCGCCGCATCATGGGAGCCGCAGTTCCTCATC
CACGGCGTTTCTCAAGGCGGTGGCGCCTGAAAGAGTATTGATCTCCCGTGGGCGCAACAATGCGTTCGGGCACCCGCACC
CGCAGGTAATGGCGCGCTATGCAGCCTTGGCCGTGCAGCCTTATGACAGCGCCGAACTGGGCGCGATTCGTCTGCAACTG
GGGGTATTCGGTGAGGCGCAAGGAGAGCGTGCCCGACGGCGCTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.028

97.561

0.625
  comA Ralstonia pseudosolanacearum GMI1000

33.216

100

0.383