Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM55_RS07890 Genome accession   NZ_CP133784
Coordinates   1691958..1692593 (-) Length   211 a.a.
NCBI ID   WP_322180865.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686958..1697593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS25870 - 1687286..1687717 (-) 432 Protein_1561 molybdopterin cofactor-binding domain-containing protein -
  RHM55_RS07860 (RHM55_07860) - 1687780..1688250 (-) 471 WP_322180853.1 (2Fe-2S)-binding protein -
  RHM55_RS07865 (RHM55_07865) murB 1688519..1689544 (-) 1026 WP_322180855.1 UDP-N-acetylmuramate dehydrogenase -
  RHM55_RS07870 (RHM55_07870) kdsB 1689544..1690308 (-) 765 WP_322180857.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM55_RS07875 (RHM55_07875) - 1690305..1690490 (-) 186 WP_058437370.1 Trm112 family protein -
  RHM55_RS07880 (RHM55_07880) lpxK 1690517..1691530 (-) 1014 WP_322180861.1 tetraacyldisaccharide 4'-kinase -
  RHM55_RS07885 (RHM55_07885) - 1691530..1691961 (-) 432 WP_322180863.1 biopolymer transporter ExbD -
  RHM55_RS07890 (RHM55_07890) exbB 1691958..1692593 (-) 636 WP_322180865.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM55_RS07895 (RHM55_07895) comA 1692677..1694893 (-) 2217 WP_322180867.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM55_RS07900 (RHM55_07900) - 1695031..1695546 (+) 516 WP_322180869.1 DUF2062 domain-containing protein -
  RHM55_RS07905 (RHM55_07905) - 1695626..1696417 (-) 792 WP_322180871.1 ABC transporter permease -
  RHM55_RS07910 (RHM55_07910) - 1696414..1697346 (-) 933 WP_322180873.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.05 Da        Isoelectric Point: 6.4886

>NTDB_id=876771 RHM55_RS07890 WP_322180865.1 1691958..1692593(-) (exbB) [Pseudomonas sp. MH9.2]
MWELVKSGGWMMLPIILSSIAAVAIIIERLWTLRASRITPPHLLGQVWRWIKDKQLNSDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLSALGTIAAMAPLLGLLGTVLGMIDIFGSFVNSGMTTNAAILAGGISKALICTA
SGLMVGIPAIFFHRFLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLTEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876771 RHM55_RS07890 WP_322180865.1 1691958..1692593(-) (exbB) [Pseudomonas sp. MH9.2]
GTGTGGGAACTGGTCAAATCAGGCGGTTGGATGATGCTGCCAATCATTCTGAGTTCCATCGCTGCTGTCGCGATCATTAT
CGAGCGGCTCTGGACGTTGCGTGCCAGCCGCATCACCCCGCCGCATTTGCTCGGTCAGGTGTGGCGCTGGATCAAAGACA
AGCAACTTAACAGCGACAAGCTCAAAGAGCTGCGCGCCGACTCACCGCTGGGCGAGATTCTCGCGGCGGGTCTGGCGAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCGGCGCGGGTCATTCATGAACTCGAGCGTTACCT
GAGTGCGTTGGGCACCATTGCTGCCATGGCGCCGTTGCTCGGTTTGCTGGGGACGGTGCTGGGCATGATCGATATCTTTG
GTTCGTTCGTGAACTCAGGCATGACCACCAATGCGGCGATACTGGCTGGCGGTATATCCAAAGCGCTGATCTGTACCGCT
TCCGGCCTGATGGTCGGTATTCCTGCCATCTTCTTCCACCGGTTCCTGCAAAGTCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGACCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844