Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM59_RS24435 Genome accession   NZ_CP133783
Coordinates   5402218..5404434 (+) Length   738 a.a.
NCBI ID   WP_322165500.1    Uniprot ID   -
Organism   Pseudomonas sp. MH10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5397218..5409434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS24415 (RHM59_24415) - 5398947..5399570 (+) 624 WP_322165504.1 glutathione S-transferase -
  RHM59_RS24420 (RHM59_24420) - 5399704..5400636 (+) 933 WP_322183544.1 ABC transporter ATP-binding protein -
  RHM59_RS24425 (RHM59_24425) - 5400633..5401436 (+) 804 WP_322183546.1 ABC transporter permease -
  RHM59_RS24430 (RHM59_24430) - 5401566..5402081 (-) 516 WP_322165501.1 DUF2062 domain-containing protein -
  RHM59_RS24435 (RHM59_24435) comA 5402218..5404434 (+) 2217 WP_322165500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM59_RS24440 (RHM59_24440) exbB 5404517..5405155 (+) 639 WP_322165499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM59_RS24445 (RHM59_24445) - 5405152..5405583 (+) 432 WP_322165498.1 biopolymer transporter ExbD -
  RHM59_RS24450 (RHM59_24450) lpxK 5405583..5406587 (+) 1005 WP_322165497.1 tetraacyldisaccharide 4'-kinase -
  RHM59_RS24455 (RHM59_24455) - 5406607..5406792 (+) 186 WP_003174668.1 Trm112 family protein -
  RHM59_RS24460 (RHM59_24460) kdsB 5406789..5407553 (+) 765 WP_322165496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM59_RS24465 (RHM59_24465) murB 5407553..5408572 (+) 1020 WP_322165495.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80909.98 Da        Isoelectric Point: 9.8636

>NTDB_id=876762 RHM59_RS24435 WP_322165500.1 5402218..5404434(+) (comA) [Pseudomonas sp. MH10]
MRTGMVALALGLLAVRFLPVLPPTWLAWLMPIMALMLLPFRSYPLAFFLFGFSWACLSAQSALNDRLPIRLDGQTLWLEG
KVVGLPQSAEGVVRFQLDGAQSRRSELPQRMRLSWYGGPPVRSGEQWRLAVKLKRPTGLVNPDSFDYEAWLLAQRIGATG
TVVDGQRRAPATSAWRDALRQHLLAVDAQGREGGLAALVLGDDSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGLIYML
VAGLARWGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACTMIGMVLLWRLRFRHLGVGWPLLLSLNAVLVFEPL
VSLQPGFWLSFAAVGILILVFSGRLGKWSWLQSWTRAQWLIAIGLLPVLLALNLPVSVSGPLANLFAVPWVSVVVLPLAL
LGTLLLPVPVLGEGLLWLAGGLLEWLFQGLALIGAMMPAWTGSAVPWWAWWLSLLGGVLLLLPSGVPLRLLGWPLLLLCV
FPPLKAVPHGQVEVLQLDVGQGLAVLLRTRGHTLLFDAGPRYGDFDIGQRVVLPAIRKTGVRRLDVMLLSHAHADHIGGA
MAVYEGLPVARVLSGEATEVPAALNAQFCKSGERWEWDGVQFTTWRWEAATESNPASCVLMVDANGERLLLTGDIDAAAE
RVAIDSDFDLRARWLQAPHHGSRSSSSMVFLKAVEPEGVLISRGRNNAFGHPHPRVMARFAALSIQPYDSAELGAIHLQL
GRYNQPQAERAGRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=876762 RHM59_RS24435 WP_322165500.1 5402218..5404434(+) (comA) [Pseudomonas sp. MH10]
ATGCGCACAGGGATGGTGGCGCTCGCGCTGGGGCTTTTAGCCGTTCGCTTTTTGCCCGTATTGCCGCCGACGTGGTTGGC
GTGGTTGATGCCCATCATGGCGCTGATGCTGTTGCCGTTTCGCAGTTATCCACTGGCGTTTTTTCTGTTTGGTTTCAGTT
GGGCGTGTCTCTCGGCCCAGTCTGCACTGAATGATCGCCTGCCAATTCGCCTCGACGGCCAGACGTTATGGCTAGAAGGC
AAAGTGGTCGGGCTGCCGCAGTCGGCCGAGGGTGTGGTTCGGTTTCAATTGGACGGCGCACAATCCCGGCGCAGCGAGTT
GCCGCAGCGCATGCGTCTGTCGTGGTACGGCGGACCACCGGTGCGCAGCGGTGAGCAGTGGCGCTTGGCGGTCAAACTCA
AGCGTCCGACGGGGTTGGTCAACCCCGACTCGTTTGACTACGAGGCCTGGCTTCTCGCGCAGCGTATTGGCGCAACGGGC
ACGGTGGTTGACGGTCAGCGACGTGCGCCCGCTACTTCAGCGTGGCGCGATGCGCTGCGTCAGCACTTGTTGGCCGTTGA
TGCCCAAGGTCGAGAAGGGGGGCTGGCGGCCTTGGTGTTGGGCGATGACTCGGGGCTGAGCACCACCGATTGGCAGGTGT
TGCAGGACACCGGCACCGTGCATTTATTGGTGATCTCGGGTCAGCACATCAGCTTGTTGGCCGGGTTGATTTACATGCTG
GTCGCCGGGTTGGCCCGTTGGGGCTTGTGGCCGCGCCGTCTACCTTGGTTGCCCTGGGCCTGTGGTTTGGCATTTGCTGC
GGCACTCGGTTATGGCTTGCTCGCGGGTTTCGAAGTCCCAGTGCGGCGTGCCTGCACCATGATCGGCATGGTCTTGCTTT
GGCGGTTGCGTTTTCGGCATCTGGGCGTGGGGTGGCCGTTGCTGTTATCGCTGAACGCGGTGCTGGTGTTCGAACCGCTG
GTCAGTTTGCAGCCAGGGTTTTGGCTGTCGTTCGCGGCAGTGGGCATCCTGATCCTGGTGTTCAGCGGTCGTTTGGGTAA
ATGGAGTTGGCTGCAGAGTTGGACTCGCGCCCAATGGTTGATCGCCATCGGATTGCTGCCGGTGTTACTGGCGCTGAACC
TGCCGGTCAGCGTCAGCGGGCCATTGGCCAATTTATTCGCGGTGCCGTGGGTCAGCGTGGTGGTGTTGCCGCTGGCCTTG
CTCGGCACGTTGCTGTTACCTGTGCCGGTGCTGGGCGAGGGGTTGTTATGGCTGGCAGGTGGGTTGTTGGAGTGGTTGTT
TCAAGGCTTGGCCCTGATCGGCGCAATGATGCCGGCCTGGACAGGCAGCGCCGTACCTTGGTGGGCCTGGTGGCTGAGCC
TGTTGGGCGGTGTCTTATTGTTACTGCCCAGTGGCGTGCCGTTGCGTCTGTTGGGATGGCCGTTGTTGCTGCTGTGCGTA
TTTCCACCGCTGAAAGCTGTTCCGCACGGTCAGGTCGAGGTGTTGCAGTTGGACGTGGGCCAAGGCTTGGCGGTGTTGCT
GCGCACCCGCGGGCACACGTTGTTGTTCGATGCCGGTCCACGCTATGGGGATTTTGATATCGGCCAGCGGGTGGTGTTGC
CCGCCATCCGCAAAACCGGGGTGCGCCGTCTCGACGTTATGTTGCTCAGCCATGCCCACGCCGATCACATTGGTGGCGCC
ATGGCGGTCTATGAGGGCTTGCCCGTTGCGCGCGTGCTCAGCGGCGAAGCGACCGAAGTGCCTGCAGCGTTGAATGCACA
GTTCTGCAAAAGCGGCGAACGCTGGGAATGGGACGGCGTGCAGTTCACGACGTGGCGCTGGGAGGCGGCGACAGAGAGCA
ATCCGGCGTCCTGTGTGTTGATGGTCGACGCCAACGGTGAACGTTTGCTGCTGACCGGGGATATCGATGCCGCCGCCGAG
CGCGTGGCGATCGACAGCGATTTCGATCTGCGCGCACGCTGGTTACAGGCCCCCCACCACGGCAGCCGAAGTTCTTCGTC
GATGGTGTTTCTAAAGGCTGTCGAACCGGAGGGGGTGCTGATCTCCCGGGGTCGCAATAATGCCTTCGGACACCCCCATC
CTCGTGTAATGGCGCGTTTTGCAGCGTTGTCGATACAGCCTTATGACAGCGCGGAGCTAGGCGCCATTCATCTGCAATTG
GGGCGATACAATCAGCCGCAGGCGGAACGTGCTGGGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(21-165)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

33.739

100

0.375