Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM59_RS24440 Genome accession   NZ_CP133783
Coordinates   5404517..5405155 (+) Length   212 a.a.
NCBI ID   WP_322165499.1    Uniprot ID   -
Organism   Pseudomonas sp. MH10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5399517..5410155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS24420 (RHM59_24420) - 5399704..5400636 (+) 933 WP_322183544.1 ABC transporter ATP-binding protein -
  RHM59_RS24425 (RHM59_24425) - 5400633..5401436 (+) 804 WP_322183546.1 ABC transporter permease -
  RHM59_RS24430 (RHM59_24430) - 5401566..5402081 (-) 516 WP_322165501.1 DUF2062 domain-containing protein -
  RHM59_RS24435 (RHM59_24435) comA 5402218..5404434 (+) 2217 WP_322165500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM59_RS24440 (RHM59_24440) exbB 5404517..5405155 (+) 639 WP_322165499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM59_RS24445 (RHM59_24445) - 5405152..5405583 (+) 432 WP_322165498.1 biopolymer transporter ExbD -
  RHM59_RS24450 (RHM59_24450) lpxK 5405583..5406587 (+) 1005 WP_322165497.1 tetraacyldisaccharide 4'-kinase -
  RHM59_RS24455 (RHM59_24455) - 5406607..5406792 (+) 186 WP_003174668.1 Trm112 family protein -
  RHM59_RS24460 (RHM59_24460) kdsB 5406789..5407553 (+) 765 WP_322165496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM59_RS24465 (RHM59_24465) murB 5407553..5408572 (+) 1020 WP_322165495.1 UDP-N-acetylmuramate dehydrogenase -
  RHM59_RS24470 (RHM59_24470) - 5408649..5409635 (+) 987 WP_322183553.1 XdhC family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23239.56 Da        Isoelectric Point: 7.9120

>NTDB_id=876763 RHM59_RS24440 WP_322165499.1 5404517..5405155(+) (exbB) [Pseudomonas sp. MH10]
MWELVKSGGWMMLPIILSSIVAVAIIIERLWTLRASRITPPHLLGQVWRWIKDKQLNKEKLRELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGTIAAMAPLLGLLGTVLGMIDIFGSFMNSGMTTNAAILAGGISKALICTA
SGLMVGIPAIFFHRFLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKKK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=876763 RHM59_RS24440 WP_322165499.1 5404517..5405155(+) (exbB) [Pseudomonas sp. MH10]
GTGTGGGAACTGGTTAAATCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTCGCTGTCGCGATCATTAT
CGAGCGACTCTGGACCTTGCGTGCCAGCCGTATAACCCCGCCGCACTTGCTCGGTCAGGTCTGGCGCTGGATCAAAGACA
AGCAACTGAACAAGGAAAAACTCCGGGAACTGCGCGCTGACTCACCGCTGGGGGAAATCCTTGCGGCCGGTCTGGCCAAC
TCGCGGCACGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCAGCACGGGTCATTCATGAACTCGAACGCTATTT
GAGCGCCTTGGGCACGATTGCGGCCATGGCGCCGTTGCTCGGTCTGCTCGGCACCGTGCTGGGGATGATCGACATCTTTG
GTTCGTTCATGAACTCGGGCATGACCACCAACGCCGCGATTTTGGCTGGCGGTATCTCCAAAGCCTTGATCTGTACCGCT
TCGGGCCTGATGGTCGGGATACCGGCGATCTTCTTTCATCGATTCCTGCAAAGCCGGGTCGACGAACTGGTCGTGGGCAT
GGAGCAGGAAGCGATCAAGTTGGTTGAAGTGGTGCAAGGCGACCGTGATGTCGACTTGGCCGAGGGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.333

99.057

0.825