Detailed information NTG0876723

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHM68_RS21365
• Genome accession: NZ_CP133782
• Coordinates: 4726603..4727475 (+)
• Length: 290 a.a.
• NCBI ID: WP_322218916.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DC1.2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4721603..4732475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM68_RS21340 (RHM68_21340)	-	4721819..4722115 (+)	297	WP_322218902.1	DUF2845 domain-containing protein	-
RHM68_RS21345 (RHM68_21345)	-	4722330..4722683 (-)	354	WP_322218905.1	BON domain-containing protein	-
RHM68_RS21350 (RHM68_21350)	-	4723039..4723455 (-)	417	WP_322218909.1	pilin	-
RHM68_RS21355 (RHM68_21355)	pilB	4723681..4725381 (+)	1701	WP_322218912.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHM68_RS21360 (RHM68_21360)	pilC	4725384..4726601 (+)	1218	WP_322218914.1	type II secretion system F family protein	Machinery gene
RHM68_RS21365 (RHM68_21365)	pilD	4726603..4727475 (+)	873	WP_322218916.1	A24 family peptidase	Machinery gene
RHM68_RS21370 (RHM68_21370)	coaE	4727472..4728095 (+)	624	WP_322218919.1	dephospho-CoA kinase	-
RHM68_RS21375 (RHM68_21375)	yacG	4728092..4728292 (+)	201	WP_322218922.1	DNA gyrase inhibitor YacG	-
RHM68_RS21380 (RHM68_21380)	-	4728302..4728517 (-)	216	WP_201198044.1	hypothetical protein	-
RHM68_RS21385 (RHM68_21385)	-	4728581..4729270 (-)	690	WP_322218924.1	energy-coupling factor ABC transporter permease	-
RHM68_RS21390 (RHM68_21390)	-	4729409..4730035 (+)	627	WP_322218926.1	DUF1780 domain-containing protein	-
RHM68_RS21395 (RHM68_21395)	-	4730032..4730559 (+)	528	WP_322218928.1	MOSC domain-containing protein	-
RHM68_RS21400 (RHM68_21400)	-	4730611..4730784 (+)	174	WP_008028730.1	DUF3094 domain-containing protein	-
RHM68_RS21405 (RHM68_21405)	-	4730845..4732143 (+)	1299	WP_322218932.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32363.60 Da
• Isoelectric Point: 8.0534

>NTDB_id=876723 RHM68_RS21365 WP_322218916.1 4726603..4727475(+) (pilD) [Pseudomonas sp. DC1.2]
MPLNDYLTFYPLAFVITALLLGLVVGSFLNVVVWRLPKMLEREWRAQANDVLGLPGETPLPTYNLLLPHSHCPHCAHRIR
AWENIPLFSYVFLRGRCSNCAAPISKRYPLTELACGLISAFIAWHFGFGWQAAMMLVLSWGLLTMSLIDAEHQVLPDVLV
LPLLWLGLIVNSFGLFVPLHEALWGAVAGYLALWSVFWLFKLLTGKDGIGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGVMLLRLRDTKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=876723 RHM68_RS21365 WP_322218916.1 4726603..4727475(+) (pilD) [Pseudomonas sp. DC1.2]
ATGCCTTTGAACGACTATCTGACCTTCTACCCGTTGGCCTTTGTCATCACCGCGCTGCTGCTTGGCCTGGTCGTCGGCAG
CTTCCTCAACGTGGTGGTCTGGCGCCTGCCCAAAATGCTTGAACGCGAATGGCGAGCCCAGGCCAATGATGTGCTGGGGC
TGCCCGGCGAGACACCCCTGCCAACGTACAACCTGCTGCTGCCGCACTCCCACTGTCCGCACTGCGCCCACAGGATTCGC
GCCTGGGAAAATATTCCGCTATTCAGTTATGTGTTTTTGCGCGGTCGCTGTTCCAACTGCGCGGCGCCGATCAGCAAACG
CTACCCGCTCACAGAACTGGCGTGCGGCCTGATTTCGGCGTTCATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCGCCA
TGATGCTGGTCCTGAGTTGGGGCTTGTTGACCATGAGCCTGATCGATGCCGAGCATCAAGTGCTGCCGGATGTGCTGGTA
CTGCCATTGTTGTGGCTGGGCCTGATCGTCAACAGCTTCGGCCTGTTCGTGCCCTTGCACGAGGCGCTTTGGGGCGCCGT
GGCCGGTTACCTGGCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTACTCACCGGCAAGGACGGCATCGGCTACGGCGATT
TCAAATTATTGGCAATGCTCGGGGCATGGGGCGGCTGGCAGATTCTGCCACTGACGATCCTGCTGTCATCCCTGGTGGGG
GCCATCATCGGCGTGATGTTACTGCGCCTGCGCGACACCAAAACCTCGACGCCGATTCCCTTCGGGCCTTATCTGGCGAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.036	95.862	0.528
pilD	Vibrio campbellii strain DS40M4	50.709	97.241	0.493
pilD	Acinetobacter baumannii D1279779	48.175	94.483	0.455
pilD	Acinetobacter nosocomialis M2	48.175	94.483	0.455
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438