Detailed information NTG0876697

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RHM61_RS09080
• Genome accession: NZ_CP133779
• Coordinates: 1990644..1992005 (+)
• Length: 453 a.a.
• NCBI ID: WP_322250794.1
• Uniprot ID: A0AAU0SBM6
• Organism: Undibacterium sp. CCC3.4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1985644..1997005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM61_RS09065 (RHM61_09065)	-	1987839..1988648 (+)	810	WP_322251075.1	cytochrome C assembly family protein	-
RHM61_RS09070 (RHM61_09070)	-	1988645..1988893 (+)	249	WP_322250792.1	PP0621 family protein	-
RHM61_RS09075 (RHM61_09075)	-	1988914..1990647 (+)	1734	WP_322250793.1	sensor histidine kinase	-
RHM61_RS09080 (RHM61_09080)	pilR	1990644..1992005 (+)	1362	WP_322250794.1	sigma-54 dependent transcriptional regulator	Regulator
RHM61_RS09085 (RHM61_09085)	-	1992441..1995344 (+)	2904	WP_322250795.1	ribonucleoside-diphosphate reductase subunit alpha	-
RHM61_RS09090 (RHM61_09090)	-	1995402..1996541 (+)	1140	WP_322250796.1	ribonucleotide-diphosphate reductase subunit beta	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49035.59 Da
• Isoelectric Point: 5.5035

>NTDB_id=876697 RHM61_RS09080 WP_322250794.1 1990644..1992005(+) (pilR) [Undibacterium sp. CCC3.4]
MSMIGTTNCPRILVVDDEAHLRELLEITLIKMGLDVDSAATVGAARVFLAKNTYALVLTDMRLPDGHGMELVDEVNALYK
NTPIAVITAFGSADNAVVALKAGAFDYVSKPVALEHLRKLVRSALELHTAVATPAPSNPVAASFLIGQSAGMQQVRAQIV
RLARSMAPVIITGESGSGKELAAREIHGSSARAAQAFIAVNCGAIPEMLMEAEFFGYRKGAFTGATEDREGFFQAANGGT
LMLDEVADLPLAMQVKLLRAIQQRSIRKVGATAEEAVDVRIISATHQDLASCVTQGRFRQDLYYRLNVIELHLPPLRERL
EDVGELAAAILGKFGGSEVAISAAALQRLGTYGFPGNVRELENILERAIAFADDACIEVDDLVLRTVAPAGLENLFCAPT
LPCMLPDFLSNLEREMIRRALVQTNHNRTQAADLLGVSFRQLRYQIQKLKIDE

Nucleotide

• Length: 1362 bp

>NTDB_id=876697 RHM61_RS09080 WP_322250794.1 1990644..1992005(+) (pilR) [Undibacterium sp. CCC3.4]
ATGAGCATGATTGGCACCACAAACTGCCCGCGTATTTTGGTGGTGGATGATGAGGCGCATCTGCGCGAACTGCTGGAAAT
TACTCTCATCAAGATGGGGCTCGACGTCGACAGCGCCGCAACGGTCGGCGCGGCGCGTGTGTTTCTGGCCAAAAATACTT
ATGCGCTGGTATTGACTGATATGCGTTTGCCCGATGGGCACGGCATGGAATTGGTCGATGAGGTCAATGCGCTGTATAAA
AACACGCCGATCGCCGTGATTACCGCCTTCGGCAGCGCCGACAATGCCGTTGTGGCGCTCAAGGCCGGGGCCTTCGATTA
CGTCTCCAAACCGGTAGCATTGGAACATTTGCGCAAGCTGGTACGTTCGGCGCTGGAACTGCACACCGCGGTAGCGACGC
CGGCACCAAGTAATCCGGTTGCCGCTTCATTTTTGATCGGCCAATCGGCCGGCATGCAGCAAGTTCGCGCGCAGATCGTG
CGGCTGGCACGCAGCATGGCACCGGTCATCATTACCGGCGAATCGGGCAGCGGCAAGGAACTGGCAGCGCGAGAAATTCA
TGGCAGCAGCGCGCGCGCGGCGCAAGCTTTCATCGCCGTCAATTGCGGTGCGATTCCGGAAATGCTGATGGAAGCAGAAT
TTTTCGGCTACCGCAAAGGCGCGTTCACGGGAGCCACGGAAGACCGCGAAGGGTTTTTTCAAGCGGCTAACGGCGGCACC
TTGATGCTCGATGAAGTGGCCGATTTACCGTTGGCGATGCAAGTCAAATTATTACGCGCGATACAGCAGCGCAGCATACG
TAAGGTCGGCGCGACGGCCGAAGAAGCGGTCGATGTGCGTATCATCAGCGCCACCCATCAGGATTTGGCCAGTTGCGTTA
CCCAAGGGCGCTTTCGCCAAGATTTGTATTACCGTCTCAATGTGATCGAGCTGCATCTGCCGCCTTTACGCGAGCGCCTG
GAAGATGTGGGCGAATTGGCTGCTGCCATCTTAGGTAAGTTCGGCGGCAGCGAGGTGGCGATTTCCGCTGCGGCCTTACA
GCGCCTGGGCACCTACGGATTCCCGGGTAATGTGCGCGAGTTGGAAAATATTCTGGAACGGGCGATTGCTTTTGCCGATG
ATGCCTGCATCGAGGTCGATGATCTGGTGTTGCGGACGGTCGCGCCGGCCGGGTTGGAAAATCTGTTCTGTGCGCCGACT
TTACCCTGCATGTTACCGGATTTTTTAAGCAATTTGGAACGCGAGATGATACGCCGCGCCTTGGTACAAACCAATCATAA
CCGCACTCAAGCGGCCGATTTACTCGGTGTCAGTTTCCGGCAGTTGCGCTATCAAATACAAAAACTCAAAATTGACGAGT
AA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (409-449)

• Response regulator receiver domain (Response_reg) (12-121)

• Sigma-54 interaction domain (Sigma54_activat) (145-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	54.26	98.455	0.534
pilR	Acinetobacter baumannii strain A118	46.537	100	0.475
luxO	Vibrio cholerae strain A1552	38.137	99.558	0.38