Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MIN45_RS01440 Genome accession   NZ_AP024718
Coordinates   291852..293213 (+) Length   453 a.a.
NCBI ID   WP_286292901.1    Uniprot ID   -
Organism   Methylomarinovum tepidoasis strain IN45     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 286852..298213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIN45_RS01425 (MIN45_P0273) sucD 288147..289016 (-) 870 WP_286292895.1 succinate--CoA ligase subunit alpha -
  MIN45_RS01430 (MIN45_P0274) sucC 289013..290185 (-) 1173 WP_286292897.1 ADP-forming succinate--CoA ligase subunit beta -
  MIN45_RS01435 (MIN45_P0275) - 290251..291855 (+) 1605 WP_286292899.1 ATP-binding protein -
  MIN45_RS01440 (MIN45_P0276) pilR 291852..293213 (+) 1362 WP_286292901.1 sigma-54 dependent transcriptional regulator Regulator
  MIN45_RS01445 (MIN45_P0277) - 293310..293570 (+) 261 WP_286292904.1 helix-hairpin-helix domain-containing protein -
  MIN45_RS01450 (MIN45_P0278) - 293616..293945 (-) 330 WP_286292907.1 integration host factor subunit alpha -
  MIN45_RS01455 (MIN45_P0279) pheT 293950..296340 (-) 2391 WP_286292909.1 phenylalanine--tRNA ligase subunit beta -
  MIN45_RS01460 (MIN45_P0280) pheS 296354..297373 (-) 1020 WP_286292910.1 phenylalanine--tRNA ligase subunit alpha -
  MIN45_RS01465 (MIN45_P0281) rplT 297380..297733 (-) 354 WP_286292911.1 50S ribosomal protein L20 -
  MIN45_RS01470 (MIN45_P0282) rpmI 297775..297972 (-) 198 WP_286292912.1 50S ribosomal protein L35 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50258.97 Da        Isoelectric Point: 6.1517

>NTDB_id=87666 MIN45_RS01440 WP_286292901.1 291852..293213(+) (pilR) [Methylomarinovum tepidoasis strain IN45]
MTQSTALVVDDEPDILELLELTLARMNVQARCAATLEEAKTWLERESFQLCLTDMRLPDGDGIDLVAYIQERFPDLPVAV
ITAHGNMEAAVRALKCGAFDFVSKPVDLQILRKLVGSAIQLTDAPKDRRSRDLLLGNSAPMRDIRGKIARLARTQAPVFI
HGESGTGKELVARLIHAKSPRADKPFVAVNCGAIPAELMESEFFGHRKGSFSGAVADHLGLFQAADGGTLFLDEVADLPL
HLQVKLLRAIQEKRVRPVGGHEEIAVDVRILSAIHKNLKALVDEGRFRQDLYYRINVIELTVPPLRQRREDIPLLADRIL
THIAHVNGLPPLMLTERALEALCRYDFPGNVRELENILERAAALCEGEILDADDLHLPPPSAPVSGISPKDAPPLPEGPF
SLEDYLGEIERRAILDALTQTRWNRSKAARRLGMTLRQLKYRLQKWGLDGGED

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=87666 MIN45_RS01440 WP_286292901.1 291852..293213(+) (pilR) [Methylomarinovum tepidoasis strain IN45]
ATGACTCAATCCACCGCCCTTGTCGTCGACGACGAACCGGACATCCTCGAACTGCTGGAACTGACGCTCGCGCGCATGAA
CGTCCAGGCCCGCTGCGCCGCCACCTTGGAAGAGGCCAAGACCTGGCTCGAGCGGGAATCCTTCCAGCTCTGTCTCACCG
ACATGCGCCTGCCGGACGGCGACGGCATCGACCTGGTCGCCTACATCCAGGAACGCTTTCCCGACCTGCCGGTGGCGGTC
ATCACCGCCCACGGCAACATGGAGGCGGCAGTGCGGGCGCTGAAGTGCGGAGCCTTCGACTTCGTTTCCAAACCGGTGGA
CCTGCAAATCCTGCGCAAACTGGTGGGCAGCGCCATTCAGCTGACCGATGCCCCCAAAGACCGCCGCTCCCGCGACTTGC
TGCTGGGGAATTCAGCGCCGATGCGCGACATCCGCGGCAAGATCGCCAGGCTGGCGCGCACCCAGGCGCCAGTGTTCATT
CACGGCGAATCCGGCACCGGCAAGGAGCTGGTGGCAAGGCTGATACACGCCAAAAGCCCGCGGGCCGACAAGCCCTTCGT
CGCCGTCAACTGCGGCGCCATTCCGGCGGAACTGATGGAAAGCGAGTTCTTCGGTCACAGGAAGGGAAGCTTTTCCGGCG
CGGTCGCCGACCACCTAGGTCTGTTCCAGGCCGCCGACGGCGGCACCCTGTTTCTCGACGAGGTCGCAGATCTCCCCCTG
CACCTGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAGCGCGTCCGCCCGGTCGGCGGCCACGAGGAGATCGCCGTGGA
CGTACGCATCCTCTCGGCCATCCATAAGAATTTGAAGGCCCTGGTGGACGAGGGCCGCTTCCGCCAGGACCTGTATTACC
GCATCAACGTCATCGAACTGACCGTCCCACCCCTGCGTCAGCGCCGCGAGGACATTCCCCTGCTGGCCGACCGCATCCTC
ACCCACATCGCCCACGTCAACGGCCTGCCTCCCCTGATGCTGACCGAGCGCGCTCTTGAGGCGCTGTGCCGTTACGATTT
CCCGGGCAACGTCCGCGAACTGGAGAACATCCTGGAACGGGCCGCCGCCCTGTGCGAGGGGGAAATCCTCGACGCCGACG
ATCTGCACCTCCCGCCCCCCTCGGCCCCCGTCTCCGGCATCTCCCCGAAGGACGCCCCCCCCCTGCCCGAGGGCCCCTTC
TCGCTGGAGGACTATCTGGGGGAAATCGAGCGACGCGCCATCCTCGACGCTCTGACGCAGACCCGCTGGAACCGTTCCAA
GGCTGCCCGCCGTCTGGGGATGACGCTGCGGCAACTCAAATACCGGTTGCAGAAATGGGGACTCGACGGCGGGGAGGACT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(406-446)

Response regulator receiver domain (Response_reg)

(7-114)

Sigma-54 interaction domain (Sigma54_activat)

(135-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.335

100

0.625
  pilR Acinetobacter baumannii strain A118

49.247

100

0.506
  luxO Vibrio cholerae strain A1552

38.031

98.675

0.375

Multiple sequence alignment