Detailed information NTG0876647

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RHM62_RS04560
• Genome accession: NZ_CP133777
• Coordinates: 959679..961067 (+)
• Length: 462 a.a.
• NCBI ID: WP_322124376.1
• Uniprot ID: -
• Organism: Actimicrobium sp. CCC2.4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 954679..966067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM62_RS04540 (RHM62_04540)	-	955537..956871 (+)	1335	WP_322124372.1	sigma-54 dependent transcriptional regulator	-
RHM62_RS04545 (RHM62_04545)	-	956920..957738 (+)	819	WP_322124373.1	cytochrome C assembly family protein	-
RHM62_RS04550 (RHM62_04550)	-	957735..957977 (+)	243	WP_322124374.1	PP0621 family protein	-
RHM62_RS04555 (RHM62_04555)	-	957977..959665 (+)	1689	WP_322124375.1	sensor histidine kinase	-
RHM62_RS04560 (RHM62_04560)	pilR	959679..961067 (+)	1389	WP_322124376.1	sigma-54 dependent transcriptional regulator	Regulator
RHM62_RS04565 (RHM62_04565)	ampD	961054..961689 (+)	636	WP_322124377.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
RHM62_RS04570 (RHM62_04570)	-	961947..964865 (+)	2919	WP_322124378.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50126.75 Da
• Isoelectric Point: 4.9863

>NTDB_id=876647 RHM62_RS04560 WP_322124376.1 959679..961067(+) (pilR) [Actimicrobium sp. CCC2.4]
MSSPRILVVDDEADLRELLEITLLKMGLDVDSAETLTQARAFLAQRDYALVLTDMRLPDGLGIELVHEITAAARPIPIAV
ITAFGSADNAVTALKAGAFDYLSKPVRVEQLRQVVHSALRIDKAEAPVASGTVPLLRLAGESVAMRDVRAQIVRLARSMA
PVAITGESGSGKELAARDIHSQSARAGKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVEDRDGFFQAASGGTLLLDEVA
DLPLAMQVKLLRAIQERRVRKVGATAEEPVDVRLISATHQDLAAWVEQGKFRQDLYYRLNVIELRLPPLRERLDDVGMLS
DVILMRLAGTDALTLLSADALAALRACAFPGNVRELENILERALAFASDGVIEVADLALRQPLPAALPAQAPEPAVVAAA
SVPPDTALPESLPDHLDEVERQIIRSALARTRFNRTQAAELLGISFRQLRYRMQRLDIHEPE

Nucleotide

• Length: 1389 bp

>NTDB_id=876647 RHM62_RS04560 WP_322124376.1 959679..961067(+) (pilR) [Actimicrobium sp. CCC2.4]
ATGAGTTCACCTCGTATCCTGGTCGTCGATGACGAAGCCGATCTGCGCGAACTGCTGGAAATCACGCTGCTCAAGATGGG
CCTGGATGTCGATAGTGCCGAGACGCTGACGCAAGCGCGTGCCTTTCTGGCACAACGCGATTACGCGCTGGTGCTGACCG
ACATGCGCTTGCCGGACGGCCTCGGTATCGAGCTGGTCCACGAGATCACCGCCGCTGCGCGACCGATACCGATCGCGGTC
ATCACCGCGTTCGGCAGTGCCGACAATGCGGTCACCGCGCTGAAGGCCGGCGCCTTCGATTACCTGTCGAAGCCGGTACG
GGTCGAGCAGTTGCGGCAAGTAGTGCACTCCGCGCTGCGCATTGACAAGGCCGAAGCGCCGGTGGCCAGTGGTACCGTGC
CGCTGTTGCGTCTGGCCGGCGAGTCGGTGGCGATGCGCGACGTGCGCGCCCAGATCGTGCGCCTGGCGCGCAGCATGGCA
CCGGTGGCCATTACCGGCGAGTCGGGTAGCGGCAAGGAACTGGCCGCGCGCGATATCCACAGTCAGAGCGCGCGTGCCGG
CAAGCCCTTTGTGGCCGTCAATTGCGGAGCGATTCCGGAAGCCTTGATGGAAGCCGAATTCTTTGGCTATCGCAAAGGGG
CGTTCACCGGCGCAGTCGAAGACCGCGACGGGTTTTTCCAGGCGGCCAGCGGTGGCACCTTGCTGCTCGATGAAGTCGCT
GATCTGCCGCTGGCGATGCAGGTCAAGCTGTTGCGGGCGATTCAGGAGCGGCGTGTGCGCAAGGTCGGCGCGACGGCCGA
AGAACCGGTTGATGTGCGCCTCATCAGCGCCACCCATCAGGACCTGGCCGCTTGGGTCGAGCAGGGCAAGTTCCGGCAGG
ATCTGTATTACCGCCTCAATGTGATCGAGTTGCGCCTGCCGCCGCTGCGCGAGCGGCTCGATGATGTCGGCATGCTGTCC
GACGTGATCCTGATGCGGCTGGCGGGAACCGATGCGCTCACGCTGCTGTCGGCCGACGCGCTGGCGGCATTGCGCGCTTG
CGCCTTCCCGGGCAACGTGCGCGAACTCGAAAACATCCTCGAGCGGGCGCTGGCCTTTGCCAGCGATGGCGTCATCGAAG
TTGCCGACCTGGCGCTGCGTCAGCCGCTGCCGGCGGCACTGCCCGCGCAAGCTCCAGAGCCCGCCGTGGTCGCGGCTGCG
TCAGTGCCGCCCGATACCGCGCTGCCGGAGTCGCTGCCCGACCATCTCGACGAGGTCGAACGGCAGATCATCCGTAGCGC
GCTGGCGCGCACCCGGTTCAACCGGACCCAGGCCGCCGAGTTGCTGGGCATCAGTTTCCGGCAACTGCGCTACCGGATGC
AGCGGCTCGATATCCATGAACCCGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (416-456)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	55.94	100	0.561
pilR	Acinetobacter baumannii strain A118	44.516	100	0.448
luxO	Vibrio cholerae strain A1552	37.037	99.351	0.368