Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RHM62_RS04430 Genome accession   NZ_CP133777
Coordinates   931547..932413 (-) Length   288 a.a.
NCBI ID   WP_322125317.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926547..937413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS04400 (RHM62_04400) argJ 927292..928530 (+) 1239 WP_322124349.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  RHM62_RS04405 (RHM62_04405) - 928570..929436 (+) 867 WP_322124350.1 ATP-binding protein -
  RHM62_RS04410 (RHM62_04410) - 929429..929854 (+) 426 WP_322124351.1 NUDIX domain-containing protein -
  RHM62_RS04415 (RHM62_04415) yacG 929860..930054 (-) 195 WP_322124352.1 DNA gyrase inhibitor YacG -
  RHM62_RS04420 (RHM62_04420) zapD 930080..930835 (-) 756 WP_322124353.1 cell division protein ZapD -
  RHM62_RS04425 (RHM62_04425) coaE 930927..931550 (-) 624 WP_322124354.1 dephospho-CoA kinase -
  RHM62_RS04430 (RHM62_04430) pilD 931547..932413 (-) 867 WP_322125317.1 A24 family peptidase Machinery gene
  RHM62_RS04435 (RHM62_04435) pilG 932413..933645 (-) 1233 WP_322124355.1 type II secretion system F family protein Machinery gene
  RHM62_RS04440 (RHM62_04440) pilB 933669..935393 (-) 1725 WP_322124356.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RHM62_RS04445 (RHM62_04445) - 935569..936870 (-) 1302 WP_322124357.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30895.71 Da        Isoelectric Point: 8.0230

>NTDB_id=876644 RHM62_RS04430 WP_322125317.1 931547..932413(-) (pilD) [Actimicrobium sp. CCC2.4]
MQDFAFLVTPGNAPGAAIAGIFGLLIGSFLNVVIHRIPKMMQRESDNYVASESGLPLPHTDRYNLMLPRSACPTCKHAIS
GIENIPVISYLALGGKCKQCRTPISARYPVVELFTALVSAALVWHFGAGITGLATLVFAWLLIAMSGIDADTQLLPDDLT
YPLLWIGLLLNINATFVPLGDAVIGAAAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQMLPMIILLSSLVG
ALVGVSLIVFGKRGRENPIPFGPYLAAAGLLALVAGDALTRMYLKWLT

Nucleotide


Download         Length: 867 bp        

>NTDB_id=876644 RHM62_RS04430 WP_322125317.1 931547..932413(-) (pilD) [Actimicrobium sp. CCC2.4]
ATGCAGGATTTTGCTTTTCTGGTGACGCCCGGCAATGCGCCGGGTGCCGCCATCGCAGGCATCTTCGGCCTGCTGATCGG
CAGCTTCCTCAACGTCGTCATCCATCGGATTCCAAAGATGATGCAACGCGAGTCCGACAACTATGTCGCCAGCGAGAGCG
GCCTGCCATTGCCCCACACGGATCGCTACAACCTGATGCTGCCGCGTTCGGCCTGCCCGACCTGCAAGCACGCCATCAGC
GGCATCGAGAACATCCCGGTCATCAGCTATCTGGCACTCGGCGGCAAATGCAAGCAATGCCGCACACCTATTTCGGCCCG
CTATCCGGTCGTCGAACTGTTCACGGCGCTGGTGTCGGCCGCGCTGGTCTGGCATTTCGGTGCCGGCATCACCGGACTGG
CCACGCTGGTCTTTGCCTGGCTGCTCATTGCGATGAGCGGCATCGATGCCGACACCCAGTTGCTACCCGATGACCTGACC
TATCCGCTGCTGTGGATCGGTCTGCTATTGAACATCAACGCGACCTTCGTGCCGCTCGGCGATGCAGTCATCGGTGCCGC
CGCCGGCTACCTGTGCCTGTGGTCGGTCTACTGGGTCTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAATTACTGGCCGCGCTGGGCGCGTGGCTGGGCTGGCAGATGCTGCCGATGATTATTCTGCTGTCGTCGCTGGTCGGT
GCCCTGGTCGGCGTCAGCCTGATCGTCTTCGGCAAGCGCGGGCGTGAGAATCCTATCCCGTTCGGTCCGTACCTCGCCGC
CGCCGGATTGCTGGCCCTGGTCGCCGGCGATGCGCTGACCCGCATGTACCTGAAGTGGCTGACGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.72

94.097

0.524
  pilD Vibrio campbellii strain DS40M4

54.074

93.75

0.507
  pilD Acinetobacter baumannii D1279779

49.135

100

0.493
  pilD Acinetobacter nosocomialis M2

48.097

100

0.483
  pilD Neisseria gonorrhoeae MS11

45.862

100

0.462