Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM64_RS17255 Genome accession   NZ_CP133776
Coordinates   3850188..3852404 (-) Length   738 a.a.
NCBI ID   WP_322165500.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3845188..3857404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS17225 (RHM64_17225) murB 3846050..3847069 (-) 1020 WP_322165495.1 UDP-N-acetylmuramate dehydrogenase -
  RHM64_RS17230 (RHM64_17230) kdsB 3847069..3847833 (-) 765 WP_322165496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM64_RS17235 (RHM64_17235) - 3847830..3848015 (-) 186 WP_003174668.1 Trm112 family protein -
  RHM64_RS17240 (RHM64_17240) lpxK 3848035..3849039 (-) 1005 WP_322165497.1 tetraacyldisaccharide 4'-kinase -
  RHM64_RS17245 (RHM64_17245) - 3849039..3849470 (-) 432 WP_322165498.1 biopolymer transporter ExbD -
  RHM64_RS17250 (RHM64_17250) exbB 3849467..3850105 (-) 639 WP_322165499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM64_RS17255 (RHM64_17255) comA 3850188..3852404 (-) 2217 WP_322165500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM64_RS17260 (RHM64_17260) - 3852541..3853056 (+) 516 WP_322165501.1 DUF2062 domain-containing protein -
  RHM64_RS17265 (RHM64_17265) - 3853186..3853989 (-) 804 WP_322165502.1 ABC transporter permease -
  RHM64_RS17270 (RHM64_17270) - 3853986..3854918 (-) 933 WP_322165503.1 ABC transporter ATP-binding protein -
  RHM64_RS17275 (RHM64_17275) - 3855052..3855675 (-) 624 WP_322165504.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80909.98 Da        Isoelectric Point: 9.8636

>NTDB_id=876623 RHM64_RS17255 WP_322165500.1 3850188..3852404(-) (comA) [Pseudomonas sp. AH2]
MRTGMVALALGLLAVRFLPVLPPTWLAWLMPIMALMLLPFRSYPLAFFLFGFSWACLSAQSALNDRLPIRLDGQTLWLEG
KVVGLPQSAEGVVRFQLDGAQSRRSELPQRMRLSWYGGPPVRSGEQWRLAVKLKRPTGLVNPDSFDYEAWLLAQRIGATG
TVVDGQRRAPATSAWRDALRQHLLAVDAQGREGGLAALVLGDDSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGLIYML
VAGLARWGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACTMIGMVLLWRLRFRHLGVGWPLLLSLNAVLVFEPL
VSLQPGFWLSFAAVGILILVFSGRLGKWSWLQSWTRAQWLIAIGLLPVLLALNLPVSVSGPLANLFAVPWVSVVVLPLAL
LGTLLLPVPVLGEGLLWLAGGLLEWLFQGLALIGAMMPAWTGSAVPWWAWWLSLLGGVLLLLPSGVPLRLLGWPLLLLCV
FPPLKAVPHGQVEVLQLDVGQGLAVLLRTRGHTLLFDAGPRYGDFDIGQRVVLPAIRKTGVRRLDVMLLSHAHADHIGGA
MAVYEGLPVARVLSGEATEVPAALNAQFCKSGERWEWDGVQFTTWRWEAATESNPASCVLMVDANGERLLLTGDIDAAAE
RVAIDSDFDLRARWLQAPHHGSRSSSSMVFLKAVEPEGVLISRGRNNAFGHPHPRVMARFAALSIQPYDSAELGAIHLQL
GRYNQPQAERAGRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=876623 RHM64_RS17255 WP_322165500.1 3850188..3852404(-) (comA) [Pseudomonas sp. AH2]
ATGCGCACAGGGATGGTGGCGCTCGCGCTGGGGCTTTTAGCCGTTCGCTTTTTGCCCGTATTGCCGCCGACGTGGTTGGC
GTGGTTGATGCCCATCATGGCGCTGATGCTGTTGCCGTTTCGCAGTTATCCACTGGCGTTTTTTCTGTTTGGTTTCAGTT
GGGCGTGTCTCTCGGCCCAGTCTGCACTGAATGATCGCCTGCCAATTCGCCTCGACGGCCAGACGTTATGGCTAGAAGGC
AAAGTGGTCGGGCTGCCGCAGTCGGCCGAGGGTGTGGTTCGGTTTCAATTGGACGGCGCACAATCCCGGCGCAGCGAGTT
GCCGCAGCGCATGCGTCTGTCGTGGTACGGCGGACCACCGGTGCGCAGCGGTGAGCAGTGGCGCTTGGCGGTCAAACTCA
AGCGTCCGACGGGGTTGGTCAACCCCGACTCGTTTGACTACGAGGCCTGGCTTCTCGCGCAGCGTATTGGCGCAACGGGC
ACGGTGGTTGACGGTCAGCGACGTGCGCCCGCTACTTCAGCGTGGCGCGATGCGCTGCGTCAGCACTTGTTGGCCGTTGA
TGCCCAAGGTCGAGAAGGGGGGCTGGCGGCCTTGGTGTTGGGCGATGACTCGGGGCTGAGCACCACCGATTGGCAGGTGT
TGCAGGACACCGGCACCGTGCATTTATTGGTGATCTCGGGTCAGCACATCAGCTTGTTGGCCGGGTTGATTTACATGCTG
GTCGCCGGGTTGGCCCGTTGGGGCTTGTGGCCGCGCCGTCTACCTTGGTTGCCCTGGGCCTGTGGTTTGGCATTTGCTGC
GGCACTCGGTTATGGCTTGCTCGCCGGTTTCGAAGTCCCAGTGCGGCGTGCCTGCACCATGATCGGCATGGTCTTGCTTT
GGCGGCTGCGTTTTCGGCATCTGGGCGTGGGGTGGCCGTTGCTGTTATCGCTGAACGCGGTGCTGGTGTTCGAACCGCTG
GTCAGTTTGCAGCCAGGGTTTTGGCTGTCGTTCGCGGCAGTGGGCATCCTGATCCTGGTGTTCAGCGGTCGTTTGGGTAA
ATGGAGCTGGCTGCAGAGTTGGACTCGCGCCCAATGGTTGATCGCCATCGGATTGCTGCCGGTGTTACTGGCGCTGAACC
TGCCGGTCAGCGTCAGCGGGCCATTGGCCAATTTATTCGCGGTGCCGTGGGTCAGCGTGGTGGTGTTGCCGCTGGCCTTG
CTCGGCACGTTGCTGTTACCTGTGCCGGTGCTGGGCGAGGGGTTGTTATGGCTGGCAGGTGGGTTGTTGGAGTGGTTGTT
TCAAGGCTTGGCCCTGATCGGCGCAATGATGCCGGCCTGGACAGGCAGCGCCGTCCCTTGGTGGGCCTGGTGGCTGAGCC
TGTTGGGCGGCGTCTTATTGTTACTGCCCAGTGGCGTGCCGTTGCGTCTGTTGGGATGGCCGTTGTTGCTGCTGTGCGTA
TTTCCACCGCTGAAAGCTGTTCCGCACGGTCAGGTCGAGGTGTTGCAGTTGGACGTGGGCCAAGGCTTGGCGGTGTTGCT
GCGCACCCGCGGGCACACGTTGTTGTTCGATGCCGGTCCACGCTATGGGGATTTTGATATCGGCCAGCGGGTGGTGTTGC
CCGCCATCCGCAAAACCGGGGTGCGCCGTCTCGACGTTATGTTGCTCAGCCATGCCCACGCCGATCACATTGGTGGCGCC
ATGGCGGTCTATGAGGGCTTGCCCGTTGCGCGCGTGCTCAGCGGCGAAGCGACCGAAGTGCCTGCAGCGTTGAATGCACA
GTTCTGCAAAAGCGGCGAACGCTGGGAATGGGACGGCGTGCAGTTCACGACGTGGCGCTGGGAGGCGGCGACAGAGAGCA
ATCCGGCGTCCTGTGTGTTGATGGTCGACGCCAACGGTGAACGTTTGCTGCTGACCGGGGATATCGATGCCGCCGCCGAG
CGCGTGGCGATCGACAGCGATTTCGATCTGCGCGCACGCTGGTTACAGGCCCCCCACCACGGCAGCCGAAGTTCTTCGTC
GATGGTGTTTCTAAAGGCTGTCGAACCGGAGGGGGTGCTGATCTCCCGGGGTCGCAATAATGCCTTCGGACACCCCCATC
CTCGTGTAATGGCGCGTTTTGCAGCGTTGTCGATACAGCCTTATGACAGCGCGGAGCTAGGCGCCATTCATCTGCAATTG
GGGCGATACAATCAGCCGCAGGCGGAACGTGCTGGGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(21-165)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

33.739

100

0.375