Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM64_RS17250 Genome accession   NZ_CP133776
Coordinates   3849467..3850105 (-) Length   212 a.a.
NCBI ID   WP_322165499.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3844467..3855105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS17220 (RHM64_17220) - 3844987..3845973 (-) 987 WP_322165494.1 XdhC family protein -
  RHM64_RS17225 (RHM64_17225) murB 3846050..3847069 (-) 1020 WP_322165495.1 UDP-N-acetylmuramate dehydrogenase -
  RHM64_RS17230 (RHM64_17230) kdsB 3847069..3847833 (-) 765 WP_322165496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM64_RS17235 (RHM64_17235) - 3847830..3848015 (-) 186 WP_003174668.1 Trm112 family protein -
  RHM64_RS17240 (RHM64_17240) lpxK 3848035..3849039 (-) 1005 WP_322165497.1 tetraacyldisaccharide 4'-kinase -
  RHM64_RS17245 (RHM64_17245) - 3849039..3849470 (-) 432 WP_322165498.1 biopolymer transporter ExbD -
  RHM64_RS17250 (RHM64_17250) exbB 3849467..3850105 (-) 639 WP_322165499.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM64_RS17255 (RHM64_17255) comA 3850188..3852404 (-) 2217 WP_322165500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM64_RS17260 (RHM64_17260) - 3852541..3853056 (+) 516 WP_322165501.1 DUF2062 domain-containing protein -
  RHM64_RS17265 (RHM64_17265) - 3853186..3853989 (-) 804 WP_322165502.1 ABC transporter permease -
  RHM64_RS17270 (RHM64_17270) - 3853986..3854918 (-) 933 WP_322165503.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23239.56 Da        Isoelectric Point: 7.9120

>NTDB_id=876622 RHM64_RS17250 WP_322165499.1 3849467..3850105(-) (exbB) [Pseudomonas sp. AH2]
MWELVKSGGWMMLPIILSSIVAVAIIIERLWTLRASRITPPHLLGQVWRWIKDKQLNKEKLRELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGTIAAMAPLLGLLGTVLGMIDIFGSFMNSGMTTNAAILAGGISKALICTA
SGLMVGIPAIFFHRFLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKKK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=876622 RHM64_RS17250 WP_322165499.1 3849467..3850105(-) (exbB) [Pseudomonas sp. AH2]
GTGTGGGAACTGGTTAAATCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTCGCTGTCGCGATCATTAT
CGAGCGACTCTGGACCTTGCGTGCCAGCCGTATAACCCCGCCGCACTTGCTCGGTCAGGTCTGGCGCTGGATCAAAGACA
AGCAACTGAACAAGGAAAAACTCCGGGAACTGCGCGCTGACTCACCGCTGGGGGAAATCCTTGCGGCCGGTCTGGCCAAC
TCGCGGCACGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCAGCACGGGTCATTCATGAACTCGAACGCTATTT
GAGCGCCTTGGGCACGATTGCGGCCATGGCGCCGTTGCTCGGTCTGCTCGGCACCGTGCTGGGGATGATCGACATCTTTG
GTTCGTTCATGAACTCGGGCATGACCACCAACGCCGCGATTTTGGCTGGCGGTATCTCCAAAGCCTTGATCTGTACCGCT
TCGGGCCTGATGGTCGGGATACCGGCGATCTTCTTTCATCGATTCCTGCAAAGCCGGGTCGACGAACTGGTCGTGGGCAT
GGAGCAGGAAGCGATCAAGTTGGTTGAAGTGGTGCAAGGCGACCGTGATGTCGACTTGGCCGAGGGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.333

99.057

0.825