Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RE409_RS26185 Genome accession   NZ_CP133763
Coordinates   5370530..5371660 (-) Length   376 a.a.
NCBI ID   WP_309558289.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5365530..5376660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS26155 (RE409_26160) flgL 5365774..5366652 (-) 879 WP_057215936.1 flagellar hook-associated protein FlgL -
  RE409_RS26160 (RE409_26165) flgK 5366668..5368227 (-) 1560 WP_309558287.1 flagellar hook-associated protein FlgK -
  RE409_RS26165 (RE409_26170) - 5368257..5368745 (-) 489 WP_201187394.1 flagellar protein FlgN -
  RE409_RS26170 (RE409_26175) flgM 5368822..5369085 (-) 264 WP_201187396.1 flagellar biosynthesis anti-sigma factor FlgM -
  RE409_RS26175 (RE409_26180) - 5369325..5369744 (-) 420 WP_098177201.1 TIGR03826 family flagellar region protein -
  RE409_RS26180 (RE409_26185) - 5369845..5370537 (-) 693 WP_309558288.1 ComF family protein -
  RE409_RS26185 (RE409_26190) comFA 5370530..5371660 (-) 1131 WP_309558289.1 DEAD/DEAH box helicase Machinery gene
  RE409_RS26190 (RE409_26195) - 5372060..5372902 (-) 843 WP_053348556.1 DegV family protein -
  RE409_RS26195 (RE409_26200) - 5373121..5373804 (-) 684 WP_053348555.1 response regulator transcription factor -
  RE409_RS26200 (RE409_26205) - 5373851..5374993 (-) 1143 WP_056524380.1 sensor histidine kinase -
  RE409_RS26205 (RE409_26210) - 5375621..5376256 (+) 636 WP_309558290.1 YigZ family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41798.52 Da        Isoelectric Point: 9.5270

>NTDB_id=876540 RE409_RS26185 WP_309558289.1 5370530..5371660(-) (comFA) [Peribacillus sp. R9-11]
MGRVSECAKLYGWIGPDLKFAVPDKVMSWDGTLTSGQQTASDCVVEAVKRKGELLVWAVCGAGKTEVLFAGIEAGLLAGK
RICMATPRTDVVLELSPRLKRAFPAIEVSALYGGSEDRSKASPLTVSTTHQLFRFSEAFDVVIIDEVDAFPYSIDDSLHY
AVNKSKKPSATTIYLTATPSKQMQRSYRSGKLQAVTIPARYHHKPIPVPEMKWSGNWQKQYLQKKIPPVIASWVSERLQL
KIPLLLFFPSIQVMEQVIPLFQTLSPKLETVHSQHPERKERVQALRNGEVPGLLTTTILERGVTIERLDVAVIGAEHEVF
SESALVQIAGRVGRSFTYPTGTITFFHYGKSKAMVEAICHIQMMNKEAWKRGLLDG

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=876540 RE409_RS26185 WP_309558289.1 5370530..5371660(-) (comFA) [Peribacillus sp. R9-11]
ATGGGGCGGGTCAGTGAATGTGCAAAATTATACGGCTGGATCGGTCCTGATTTGAAGTTTGCGGTTCCTGACAAAGTAAT
GAGCTGGGATGGAACTCTAACTTCAGGTCAGCAAACGGCCTCGGACTGTGTCGTTGAGGCTGTAAAAAGAAAAGGTGAAT
TACTGGTATGGGCCGTATGCGGAGCTGGTAAAACGGAAGTCCTATTTGCTGGCATTGAGGCGGGCTTGCTTGCCGGAAAA
CGAATCTGTATGGCAACACCTCGGACCGATGTCGTTCTCGAACTGTCACCCCGGTTAAAAAGAGCCTTTCCAGCCATTGA
GGTATCCGCTCTGTATGGAGGCAGCGAAGACCGAAGCAAAGCTTCGCCGCTAACCGTTTCCACCACACATCAGCTTTTTC
GTTTTTCTGAAGCCTTCGATGTAGTCATCATTGATGAAGTCGATGCGTTTCCCTACTCTATTGATGATTCTCTACATTAT
GCGGTTAATAAATCCAAAAAGCCCTCTGCTACAACTATCTACTTAACTGCCACTCCTTCTAAACAGATGCAACGATCTTA
CCGTAGCGGGAAACTGCAAGCCGTGACAATCCCTGCCCGTTACCATCATAAGCCGATCCCTGTTCCTGAAATGAAATGGA
GCGGCAATTGGCAAAAACAATATCTCCAAAAAAAGATTCCTCCTGTGATTGCCAGTTGGGTAAGCGAACGTCTTCAGCTG
AAGATTCCTCTATTATTATTTTTTCCGAGCATTCAGGTGATGGAACAGGTAATTCCGTTGTTTCAAACACTATCCCCTAA
ATTGGAGACCGTTCACTCACAGCACCCTGAACGAAAAGAAAGAGTACAGGCATTACGGAATGGCGAGGTCCCTGGATTAT
TGACCACGACGATTTTAGAACGCGGGGTGACAATTGAGCGACTAGACGTAGCCGTGATTGGTGCTGAACATGAGGTGTTT
TCTGAGAGTGCTCTCGTCCAGATTGCCGGCCGCGTCGGCAGAAGCTTTACTTATCCAACGGGTACTATCACTTTTTTTCA
TTACGGAAAAAGCAAAGCTATGGTCGAGGCGATCTGCCATATACAAATGATGAATAAAGAGGCCTGGAAAAGAGGTCTGC
TGGATGGCTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(245-334)

Type III restriction enzyme, res subunit (ResIII)

(33-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.811

98.404

0.5
  comFA/cflA Streptococcus mitis SK321

42.857

98.67

0.423
  comFA/cflA Streptococcus mitis NCTC 12261

40.811

98.404

0.402
  comFA/cflA Streptococcus pneumoniae R6

40.541

98.404

0.399
  comFA/cflA Streptococcus pneumoniae Rx1

40.541

98.404

0.399
  comFA/cflA Streptococcus pneumoniae D39

40.541

98.404

0.399
  comFA/cflA Streptococcus pneumoniae TIGR4

40.27

98.404

0.396
  comFA Lactococcus lactis subsp. cremoris KW2

38.211

98.138

0.375