Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RF679_RS12410 Genome accession   NZ_CP133720
Coordinates   2933028..2933429 (-) Length   133 a.a.
NCBI ID   WP_309480946.1    Uniprot ID   -
Organism   Undibacterium cyanobacteriorum strain 20NA77.5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928028..2938429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF679_RS12395 (RF679_12395) - 2929587..2931959 (-) 2373 WP_373921678.1 methyl-accepting chemotaxis protein -
  RF679_RS12400 (RF679_12400) - 2932042..2932623 (-) 582 WP_309480945.1 chemotaxis protein CheW -
  RF679_RS12405 (RF679_12405) - 2932636..2933001 (-) 366 WP_186924570.1 response regulator transcription factor -
  RF679_RS12410 (RF679_12410) pilG 2933028..2933429 (-) 402 WP_309480946.1 response regulator Regulator
  RF679_RS12415 (RF679_12415) - 2933623..2933793 (-) 171 WP_309480947.1 rubredoxin -
  RF679_RS12420 (RF679_12420) hemL 2934166..2935446 (+) 1281 WP_309480948.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RF679_RS12425 (RF679_12425) - 2935868..2937736 (+) 1869 WP_309480949.1 TolC family outer membrane protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14796.11 Da        Isoelectric Point: 8.4781

>NTDB_id=876101 RF679_RS12410 WP_309480946.1 2933028..2933429(-) (pilG) [Undibacterium cyanobacteriorum strain 20NA77.5]
MSTTTGNENLRIMVIDDSSTIRRSAEIFLGQVGYKVVLAEDGFDALAKINDTHPHLIFCDILMPRLDGYQTCALIKKSAK
FRDTPVIMLSSKDGLFDRARGAMVGSEEYLTKPFTKDSLLKTVRKYTSTVVAN

Nucleotide


Download         Length: 402 bp        

>NTDB_id=876101 RF679_RS12410 WP_309480946.1 2933028..2933429(-) (pilG) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGTCAACGACAACAGGTAATGAAAATTTGAGAATAATGGTGATCGACGATAGCAGCACGATTCGAAGATCAGCAGAAAT
TTTTCTTGGGCAGGTTGGCTATAAGGTCGTATTAGCGGAGGACGGCTTCGATGCTTTGGCCAAAATCAATGATACGCATC
CGCACTTGATCTTTTGCGATATCTTAATGCCACGACTTGATGGCTATCAGACCTGTGCATTGATTAAAAAGAGCGCGAAA
TTTCGAGATACGCCAGTGATCATGCTTTCGTCGAAAGATGGATTGTTCGATCGTGCCCGTGGTGCTATGGTCGGATCAGA
GGAATATCTCACAAAACCCTTTACAAAAGATAGCCTATTGAAAACGGTCAGAAAGTACACTTCGACCGTAGTAGCTAATT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.475

91.729

0.564