Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   TOL5_RS19535 Genome accession   NZ_AP024708
Coordinates   4194925..4197150 (+) Length   741 a.a.
NCBI ID   WP_151780662.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4189925..4202150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS19510 (TOL5_38510) - 4191078..4191416 (-) 339 WP_121775448.1 tRNA-binding protein -
  TOL5_RS19515 (TOL5_38520) - 4192112..4192375 (+) 264 WP_121775449.1 DUF2798 domain-containing protein -
  TOL5_RS19520 (TOL5_38530) - 4192461..4192796 (-) 336 WP_004825308.1 hypothetical protein -
  TOL5_RS19525 (TOL5_38540) gspG 4193078..4193515 (-) 438 WP_004825310.1 type II secretion system major pseudopilin GspG -
  TOL5_RS19530 (TOL5_38550) gspF 4193551..4194756 (-) 1206 WP_221260580.1 type II secretion system inner membrane protein GspF -
  TOL5_RS19535 (TOL5_38560) priA 4194925..4197150 (+) 2226 WP_151780662.1 primosomal protein N' Machinery gene
  TOL5_RS19540 (TOL5_38570) - 4197630..4199525 (+) 1896 WP_221260582.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  TOL5_RS19545 (TOL5_38580) - 4199609..4200484 (+) 876 WP_004825322.1 Hsp33 family molecular chaperone HslO -
  TOL5_RS19550 (TOL5_38590) - 4200610..4201059 (+) 450 WP_058970997.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84159.56 Da        Isoelectric Point: 9.1250

>NTDB_id=87603 TOL5_RS19535 WP_151780662.1 4194925..4197150(+) (priA) [Acinetobacter sp. Tol 5]
MPNTIVTPQTIYRVQVAVPVYLNDCFDYQVSAEQYAQAEIGARVAVSFGRQNLVGVIVKKIPIDEPIDSHFKLKAITKLL
DDHAILDSKVLNLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYDLLARVWKVIDLHAEDKVKRSEKQQDAYKILKLHPKG
TQENILNLSGIETATLKVLEKKAIIQFALEPQNTQPEPVQLAQLPLTPNEDQKKAIQTILKALKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRLQAWQHAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIESYYLARQEKLTRIELNQRAGVALMPKMHL
IDLKVAKKQHGLSDVLIGEIKKRLDKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RLPDACPQCNQQQLKPIGMGTAKVEETLTELFPNFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGENKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAALL
PPFRYASLIRCESKHQEENLKFLTEMTQLLRQMSESHLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYVHQWWAQ
LLQQKPSTMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=87603 TOL5_RS19535 WP_151780662.1 4194925..4197150(+) (priA) [Acinetobacter sp. Tol 5]
ATGCCGAATACCATTGTTACACCACAAACTATTTATCGTGTTCAAGTTGCTGTTCCAGTGTATTTGAATGACTGTTTTGA
CTATCAAGTGAGTGCTGAACAGTACGCACAGGCAGAAATCGGTGCACGTGTTGCTGTGTCTTTCGGACGACAAAATCTTG
TTGGGGTGATTGTAAAAAAAATTCCGATTGATGAACCTATAGACTCTCATTTTAAACTCAAAGCAATTACTAAACTATTA
GATGATCACGCTATTCTAGACAGTAAAGTTTTAAATTTATTGACATGGTCATCGCAATATTACCAATTCCCAATTGGTGA
GGTGATTCAAACTGCCCTTCCTACATTACTCCGCCAAGGTAAACCTTATGATTTATTGGCTCGTGTTTGGAAAGTGATAG
ATTTACATGCTGAAGACAAAGTAAAGCGTTCTGAAAAACAACAAGATGCTTATAAAATTCTAAAATTACATCCAAAAGGA
ACGCAGGAAAATATCCTAAATCTGAGTGGTATTGAAACAGCAACACTAAAAGTGCTTGAGAAAAAAGCAATTATCCAATT
TGCACTTGAACCTCAAAATACTCAACCTGAACCAGTTCAATTGGCTCAGTTGCCACTCACTCCCAATGAAGATCAAAAGA
AAGCCATCCAAACGATTTTAAAGGCACTAAAGAAATATCAAGCATTTTTGTTAGATGGTCTAACGGGAAGTGGTAAAACT
GAGGTTTATTTACAAGTGATGCATGAGGTACTGAAACAAGGCAAACAAGTGCTTGTTTTAGTCCCTGAAATTGGCTTAAC
ACCACAAACCATCAGCCGTTTTCAGTCACGCTTTCATTGCAATATTGCATTGCTTCACTCTGGTTTAAATGACAGCAAAC
GTTTACAAGCATGGCAACATGCACAAACAGGTAAAGCCTCTATTATTTTAGGGACTCGCTCTGCAATTTATACACCTTTA
CCTAATCTCGGTTTAATTATTCTGGATGAAGAGCATGATCTTTCATTTAAACAACAAGAAGGTTTCCGTTATCATGCCCG
TGATGTTGCGTTATACCGTGCACATTTAGAAAATTGTCCAATTATCTTAGGTTCTGCCACACCAAGTATTGAAAGCTATT
ATTTGGCTCGTCAAGAAAAGCTGACACGTATTGAATTAAATCAACGTGCAGGCGTCGCGTTGATGCCGAAAATGCATTTG
ATTGATTTAAAAGTTGCTAAGAAGCAACATGGCTTAAGCGATGTCTTAATCGGGGAAATTAAAAAGCGTCTAGATAAAAA
AGAACAGGTCTTAATTTTTTTAAATCGTCGCGGTTATGCACCTGTATTAATTTGTGAAAGTTGTGGATGGCAAGCCAACT
GCCCAAATTGTGATGCACACTTTACCTTACACTTAAAACCTTATCAGCATTTACACTGCCATCATTGTGGGACGATTAAT
CGTTTGCCTGATGCCTGCCCACAATGCAATCAACAACAATTAAAACCAATCGGCATGGGAACTGCAAAGGTTGAAGAAAC
ATTAACTGAATTATTCCCCAACTTTCCTGTACTTCGCGTCGATCGAGACTCAACTAGCCGTGTCGGCAGTTGGCAGAAAA
TCTATGATCAGATTCAAAAAAGTGAACCCACGATTTTGCTTGGGACGCAAATGCTCGCCAAAGGGCATCATTTCCCATAT
GTCACTTTGGTTGCAATCTTAGATATAGATGCAGGTTTACTCAGTGTCGACTTTCGAGCAACAGAGCGTACAGCCCAATT
GATTATTCAAGTTGCAGGTCGGGCAGGTCGTGGAGAGAACAAAGGTGAAGTCTATTTGCAAACACTTCGACCTGATCATC
CTTTATTAAATACTTTGATTCACAATGACTATCGAACCTTTGCCAAGCAAACCTTAAAAGATCGTCAAGCCGCTTTGCTT
CCCCCTTTTCGCTATGCCAGTTTGATACGCTGTGAATCTAAACATCAGGAAGAAAATCTAAAGTTTTTGACTGAAATGAC
ACAATTACTTCGTCAAATGTCGGAATCACACTTAATTGATATTTGGGGACCTATTCCAGCTCCAATGGAGCGTAAAGCAG
GTCGTTACCAAGCACATGTGGTATTGCTTTCACAAGATCGAGCAAAAATGCACTTTTATGTCCATCAATGGTGGGCTCAA
TTACTACAGCAAAAACCCTCTACAATGAAAGTAACGATTGATGTTGATCCACAAGAGTTGAGTTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.795

100

0.718

Multiple sequence alignment